RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TEX9Q8N6V9 391 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 AMER3Q8N944 861 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 OR2L5Q8NG80 312 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 UBTD2Q8WUN7 234 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 DYDC1Q8WWB3 177 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 ASB5Q8WWX0 329 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 PNPLA2Q96AD5 504 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 CMTM7Q96FZ5 175 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 GRAMD2BQ96HH9 432 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 ZNF317Q96PQ6 595 aaPredicted RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 MRPL57Q9BQC6 102 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 NUDT9Q9BW91 350 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 IQCGQ9H095 443 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 AGPAT4Q9NRZ5 378 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 NMRK1Q9NWW6 199 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 NKIRAS1Q9NYS0 192 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 STK38LQ9Y2H1 464 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 MRPS2Q9Y399 296 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 PTGDR2Q9Y5Y4 395 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 SESN1Q9Y6P5 492 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 ZNF462Q96JM2 2506 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 TMEM120BA0PK00 339 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 MAGEB17A8MXT2 336 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 TAPBPO15533 448 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 CHST10O43529 356 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 CDH2P19022 906 aaPredicted RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 ANXA7P20073 488 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 LMO1P25800 156 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 PPP2R1BP30154 601 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 TLX1P31314 330 aaPredicted RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 TSFMP43897 325 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 SLC18A1P54219 525 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 MTTPP55157 894 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 OR4D2P58180 307 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 RAB8AP61006 207 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 NAA20P61599 178 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 BTN3A2P78410 334 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 ARG2P78540 354 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 MAT1AQ00266 395 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 BIKQ13323 160 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 GTF2H2Q13888 395 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 DOC2AQ14183 400 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 ABRAXAS2Q15018 415 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 SYT16Q17RD7 645 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 GTF2H2CQ6P1K8 395 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 TMEM205Q6UW68 189 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 IGFL3Q6UXB1 125 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 SLC22A9Q8IVM8 553 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.8□□□□□ -1.48
USP40-202ENST00000409945 SLC5A8Q8N695 610 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 OR2AK2Q8NG84 335 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 ACMSDQ8TDX5 336 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 UTP15Q8TED0 518 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 CCDC126Q96EE4 140 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 RRNAD1Q96FB5 475 aaKnown RBP5.8□□□□□ -1.48
USP40-202ENST00000409945 ATOH8Q96SQ7 321 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 TMEM79Q9BSE2 394 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 TBCDQ9BTW9 1192 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 VN1R1Q9GZP7 353 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 RHBGQ9H310 441 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 RABEP2Q9H5N1 569 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 CLMPQ9H6B4 373 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 WDR41Q9HAD4 459 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 MS4A12Q9NXJ0 267 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 AHSPQ9NZD4 102 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 OR6C3Q9NZP0 311 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 COPG2Q9UBF2 871 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 IKZF3Q9UKT9 509 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 MMACHCQ9Y4U1 282 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 SNX8Q9Y5X2 465 aa5.8□□□□□ -1.48
USP40-202ENST00000409945 SMG1Q96Q15 3661 aaKnown RBP5.79□□□□□ -1.48
USP40-202ENST00000409945 BOD1L1Q8NFC6 3051 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 CFAP46Q8IYW2 2715 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 LOC102723996A0A087X1L8 192 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 IGHV1-45A0A0A0MS14 117 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 LRIT2A6NDA9 550 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 TRIM64A6NGJ6 449 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 ZNF860A6NHJ4 632 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 TRIM64BA6NI03 449 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 INAFM1C9JVW0 142 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 CTDSP2O14595 271 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 HCRTR2O43614 444 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 B4GALT2O60909 372 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 SOX30O94993 753 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 CLDN9O95484 217 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 OTCP00480 354 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 C1QAP02745 245 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 GSTA1P08263 222 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 HOXB5P09067 269 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 SSR2P43308 183 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 SLC15A1P46059 708 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 ARFIP1P53367 373 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 PLA2G16P53816 162 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 MFAP4P55083 255 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 STX4Q12846 297 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 MFAP5Q13361 173 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 TMEM154Q6P9G4 183 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 COLCA1Q6ZS62 124 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 PAGE2Q7Z2X7 111 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 ZNF595Q8IYB9 648 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms