RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SFXN2Q96NB2 322 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 LIN7BQ9HAP6 207 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 SLC28A3Q9HAS3 691 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 RBFOX1Q9NWB1 397 aaKnown RBP11.14□□□□□ -0.63
HMGB1-206ENST00000405805 SPHK1Q9NYA1 384 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 NPAP1Q9NZP6 1156 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ATG4BQ9Y4P1 393 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 FKBP7Q9Y680 259 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 SLC35G6P0C7Q6 338 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ICAM2P13598 275 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ACVR2AP27037 513 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ITPKBP27987 946 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 CCR2P41597 374 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 OR10A3P58181 314 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 PLK5Q496M5 336 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ADAM5Q6NVV9 412 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 NUDT18Q6ZVK8 323 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 SUN3Q8TAQ9 357 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 MARC2Q969Z3 335 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 SLC41A3Q96GZ6 507 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ST6GAL2Q96JF0 529 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 CHRDQ9H2X0 955 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 SRMSQ9H3Y6 488 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 C11orf49Q9H6J7 331 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 IL21Q9HBE4 155 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 SLC23A2Q9UGH3 650 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 KCNE3Q9Y6H6 103 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 MEIS3P1A6NDR6 274 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 C5orf51A6NDU8 294 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 PRAMEF25A6NGN4 478 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 LDB3O75112 727 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ADRB3P13945 408 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 BMP8BP34820 402 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 MRPL19P49406 292 aaKnown RBP11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ENTPD8Q5MY95 495 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ZBTB37Q5TC79 503 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 BMP8AQ7Z5Y6 402 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 VN1R2Q8NFZ6 395 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 OR13C5Q8NGS8 318 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 CDS1Q92903 461 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 DTD2Q96FN9 168 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF559Q9BR84 538 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 MTIF3Q9H2K0 278 aaKnown RBP11.14□□□□□ -0.63
HMGB1-206ENST00000405805 MIOXQ9UGB7 285 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 LAMA3Q16787 3333 aa11.14□□□□□ -0.63
HMGB1-206ENST00000405805 TVP23AA6NH52 213 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 MT-ND5P03915 603 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 CMPK1P30085 196 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 CRYBB2P43320 205 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 EIF2S3LQ2VIR3 472 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF542PQ5EBM4 170 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 ENPP7Q6UWV6 458 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 LINC00299Q6ZSB3 139 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 METTL27Q8N6F8 245 aaPredicted RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 RERGQ96A58 199 aaPredicted RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 DCLRE1CQ96SD1 692 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 TCEAL7Q9BRU2 100 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 CPEB1Q9BZB8 566 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 DNTTIP1Q9H147 329 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 SLITRK2Q9H156 845 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 TMEM38AQ9H6F2 299 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 MYEF2Q9P2K5 600 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 A0A1W2PS29 197 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 SLC5A10A0PJK1 596 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 CBY3A6NI87 242 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 UBXN7O94888 489 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 PPP1R3DO95685 299 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 IFNGP01579 166 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 RAF1P04049 648 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 ACP2P11117 423 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 B2MP61769 119 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 SNRPEP62304 92 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 PDZK1IP1Q13113 114 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 RBM39Q14498 530 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 MPEG1Q2M385 716 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 PRAMEF17Q5VTA0 474 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF529Q6P280 563 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 GPALPP1Q8IXQ4 340 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 SLC16A11Q8NCK7 471 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 OR4D11Q8NGI4 311 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 OR52E2Q8NGJ4 325 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 TMEM163Q8TC26 289 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 PDXPQ96GD0 296 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 PINK1Q9BXM7 581 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.13□□□□□ -0.631e-6■■■■□ 22.9
HMGB1-206ENST00000405805 KLF15Q9UIH9 416 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 TDRD15B5MCY1 1934 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 SDC3O75056 442 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 RGS11O94810 467 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 CTSLP07711 333 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 SNRNP70P08621 437 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 GABRA3P34903 492 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 BIKQ13323 160 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 HENMT1Q5T8I9 393 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 FIP1L1Q6UN15 594 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 ERN2Q76MJ5 926 aaKnown RBP11.13□□□□□ -0.63
HMGB1-206ENST00000405805 OR10K1Q8NGX5 313 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 BADQ92934 168 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 C4orf36Q96KX1 117 aa11.13□□□□□ -0.63
HMGB1-206ENST00000405805 PITHD1Q9GZP4 211 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms