RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 ZGRF1Q86YA3 2104 aa26.53■■□□□ 1.84
USP42-202ENST00000404008 MED12Q93074 2177 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 LINC01387J3KSC0 135 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 ZNF682O95780 498 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 GP1BBP13224 206 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 PTGS2P35354 604 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 TRIM25Q14258 630 aaKnown RBP26.52■■□□□ 1.84
USP42-202ENST00000404008 DCST1Q5T197 706 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 LACC1Q8IV20 430 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 OR52E4Q8NGH9 312 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 OR4D11Q8NGI4 311 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 LZICQ8WZA0 190 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 SARAFQ96BY9 339 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 DCAF13Q9NV06 445 aaKnown RBP26.52■■□□□ 1.84
USP42-202ENST00000404008 ACTR3BQ9P1U1 418 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 TESQ9UGI8 421 aaKnown RBP26.52■■□□□ 1.84
USP42-202ENST00000404008 RPS6KA6Q9UK32 745 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 SH3GLB1Q9Y371 365 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 ZNF337Q9Y3M9 751 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 GTF3C1Q12789 2109 aa26.52■■□□□ 1.84
USP42-202ENST00000404008 SLC1A3P43003 542 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 COPZ1P61923 177 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 RBPJQ06330 500 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 NPTX1Q15818 432 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 ZNF605Q86T29 641 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 EID3Q8N140 333 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 OR6T1Q8NGN1 323 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 VANGL1Q8TAA9 524 aaPredicted RBP26.51■■□□□ 1.83
USP42-202ENST00000404008 CCDC124Q96CT7 223 aaKnown RBP26.51■■□□□ 1.83
USP42-202ENST00000404008 ASB9Q96DX5 294 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 TIMP4Q99727 224 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 SLC9A8Q9Y2E8 581 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 ZNF835Q9Y2P0 537 aa26.51■■□□□ 1.83
USP42-202ENST00000404008 NPIPA2E9PIF3 369 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 NPIPA3F8WFD2 350 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 TPST2O60704 377 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 TNFRSF1BP20333 461 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 HTR2AP28223 471 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 ELK4P28324 431 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 LHX2P50458 406 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 MS4A2Q01362 244 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 MRPL49Q13405 166 aaKnown RBP26.5■■□□□ 1.83
USP42-202ENST00000404008 WBP2NLQ6ICG8 309 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 PLEKHM3Q6ZWE6 761 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 GRINAQ7Z429 371 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 VTCN1Q7Z7D3 282 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 RANBP3LQ86VV4 465 aaPredicted RBP26.5■■□□□ 1.83
USP42-202ENST00000404008 RBM45Q8IUH3 476 aaKnown RBP26.5■■□□□ 1.83
USP42-202ENST00000404008 ULK2Q8IYT8 1036 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 MCUR1Q96AQ8 359 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 NSMCE2Q96MF7 247 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 ZNF559Q9BR84 538 aa26.5■■□□□ 1.83
USP42-202ENST00000404008 SAMD4AQ9UPU9 718 aaKnown RBP26.5■■□□□ 1.83
USP42-202ENST00000404008 H3BML4 177 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 SLC19A2O60779 497 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 ABOP16442 354 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 IL11P20809 199 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 MERTKQ12866 999 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 ASRGL1Q7L266 308 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 ATCAYQ86WG3 371 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 CARM1Q86X55 608 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 CADM2Q8N3J6 435 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 LSMEM1Q8N8F7 131 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 HSH2DQ96JZ2 352 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 PRR14Q9BWN1 585 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 ADAM19Q9H013 955 aa26.49■■□□□ 1.83
USP42-202ENST00000404008 BCKDKO14874 412 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 EFNA2O43921 213 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 FMO6PO60774 539 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 ATP6V1B2P21281 511 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 HTR3AP46098 478 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 OR1E2P47887 323 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 STARP49675 285 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 LCN8Q6JVE9 175 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 ENPP6Q6UWR7 440 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 FAM57AQ8TBR7 257 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 TRIM2Q9C040 744 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 ACAD8Q9UKU7 415 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 AP4B1Q9Y6B7 739 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 RELNP78509 3460 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 NBASA2RRP1 2371 aa26.48■■□□□ 1.83
USP42-202ENST00000404008 POU3F2P20265 443 aaPredicted RBP26.47■■□□□ 1.83
USP42-202ENST00000404008 APOBEC1P41238 236 aaKnown RBP26.47■■□□□ 1.83
USP42-202ENST00000404008 CYP2R1Q6VVX0 501 aa26.47■■□□□ 1.83
USP42-202ENST00000404008 Q6ZPB1 254 aaPredicted RBP26.47■■□□□ 1.83
USP42-202ENST00000404008 DHFR2Q86XF0 187 aa26.47■■□□□ 1.83
USP42-202ENST00000404008 MCHR1Q99705 422 aa26.47■■□□□ 1.83
USP42-202ENST00000404008 PRDM14Q9GZV8 571 aa26.47■■□□□ 1.83
USP42-202ENST00000404008 MMADHCQ9H3L0 296 aaPredicted RBP26.47■■□□□ 1.83
USP42-202ENST00000404008 CTPS2Q9NRF8 586 aa26.47■■□□□ 1.83
USP42-202ENST00000404008 ACOT8O14734 319 aa26.46■■□□□ 1.83
USP42-202ENST00000404008 PEPDP12955 493 aa26.46■■□□□ 1.83
USP42-202ENST00000404008 CPN1P15169 458 aa26.46■■□□□ 1.83
USP42-202ENST00000404008 ZNF708P17019 499 aa26.46■■□□□ 1.83
USP42-202ENST00000404008 TACR3P29371 465 aa26.46■■□□□ 1.83
USP42-202ENST00000404008 POLR2HP52434 150 aaKnown RBP26.46■■□□□ 1.83
USP42-202ENST00000404008 CLDN18P56856 261 aa26.46■■□□□ 1.83
USP42-202ENST00000404008 RAC1P63000 192 aa26.46■■□□□ 1.83
USP42-202ENST00000404008 TRAP1Q12931 704 aaKnown RBP26.46■■□□□ 1.83
USP42-202ENST00000404008 SELENBP1Q13228 472 aa26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms