RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SEMA6AQ9H2E6 1030 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 NMNAT1Q9HAN9 279 aaPredicted RBP16.42■□□□□ 0.22
SDC1-203ENST00000403076 MED17Q9NVC6 651 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 TUBD1Q9UJT1 453 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 C15orf41Q9Y2V0 281 aa16.42■□□□□ 0.22
SDC1-203ENST00000403076 E2F6O75461 281 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 TRAPPC6AO75865 159 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 HK1P19367 917 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 ALG10BQ5I7T1 473 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 FGD3Q5JSP0 725 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 Q6ZS92 163 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 GDF7Q7Z4P5 450 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 OFCC1Q8IZS5 231 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 RBMXL3Q8N7X1 1067 aaKnown RBP16.41■□□□□ 0.22
SDC1-203ENST00000403076 PIK3C3Q8NEB9 887 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 ST8SIA1Q92185 356 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 TTTY12Q9BZ98 90 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 AGPAT4Q9NRZ5 378 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 ACER3Q9NUN7 267 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 PRDM4Q9UKN5 801 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 ACAD8Q9UKU7 415 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 SLC7A7Q9UM01 511 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 SAMHD1Q9Y3Z3 626 aaKnown RBP16.41■□□□□ 0.22
SDC1-203ENST00000403076 U3KQV3 271 aa16.41■□□□□ 0.22
SDC1-203ENST00000403076 CACNA1GO43497 2377 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 A0A087WZY1 265 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 A0A0B4J2E0 115 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 A0A1B0GX12 115 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 FAM166BA8MTA8 275 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 TNFRSF11BO00300 401 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 RFPL3SP0C7P2 107 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 TACR3P29371 465 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 MERTKQ12866 999 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 PPP1R8Q12972 351 aaKnown RBP16.4■□□□□ 0.22
SDC1-203ENST00000403076 TRAM2Q15035 370 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 COLEC12Q5KU26 742 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 POMZP3Q6PJE2 187 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 SLC22A16Q86VW1 577 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 LILRA2Q8N149 483 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 SLC39A7Q92504 469 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 C3orf49Q96BT1 292 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 CENPNQ96H22 339 aaPredicted RBP16.4■□□□□ 0.22
SDC1-203ENST00000403076 RNPEPL1Q9HAU8 725 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 STX18Q9P2W9 335 aaKnown RBP16.4■□□□□ 0.22
SDC1-203ENST00000403076 TMCC3Q9ULS5 477 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 B3GNT3Q9Y2A9 372 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 ELOA3DA6NLF2 546 aaPredicted RBP16.4■□□□□ 0.22
SDC1-203ENST00000403076 ACOT7O00154 380 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 PRSS23O95084 383 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 ATP6V1G2O95670 118 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 THRBP10828 461 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 PRKCAP17252 672 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 CXCR1P25024 350 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 SRD5A2P31213 254 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 HTR3AP46098 478 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 PPIAP62937 165 aaKnown RBP16.4■□□□□ 0.22
SDC1-203ENST00000403076 ELOA3BQ3SY89 546 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 HMBOX1Q6NT76 420 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 GRINAQ7Z429 371 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 ZNF605Q86T29 641 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 ZFP62Q8NB50 900 aaPredicted RBP16.4■□□□□ 0.22
SDC1-203ENST00000403076 ICA1LQ8NDH6 482 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 ELOA3Q8NG57 546 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 OR14L1PQ8NHC6 308 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 ZNF524Q96C55 264 aa16.4■□□□□ 0.22
SDC1-203ENST00000403076 C6orf203Q9P0P8 240 aaPredicted RBP16.4■□□□□ 0.22
SDC1-203ENST00000403076 RPH3AQ9Y2J0 694 aaPredicted RBP16.4■□□□□ 0.22
SDC1-203ENST00000403076 PCNX3Q9H6A9 2034 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 CHP2O43745 196 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 RASAL1O95294 804 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 THY1P04216 161 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 PNMTP11086 282 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 CCNA2P20248 432 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 MST1P26927 711 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 POLR2HP52434 150 aaKnown RBP16.39■□□□□ 0.21
SDC1-203ENST00000403076 ARHGDIAP52565 204 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 PMP22Q01453 160 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 FOXF1Q12946 379 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 ST3GAL2Q16842 350 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 PLPPR5Q32ZL2 321 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 DCST1Q5T197 706 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 RAET1LQ5VY80 246 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 RRM2BQ7LG56 351 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 YRDCQ86U90 279 aaKnown RBP16.39■□□□□ 0.21
SDC1-203ENST00000403076 SLC38A4Q969I6 547 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 ZBTB8AQ96BR9 441 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 MRGPRX4Q96LA9 322 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 ADAM19Q9H013 955 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 VNN3Q9NY84 501 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 NKX1-2Q9UD57 310 aaPredicted RBP16.39■□□□□ 0.21
SDC1-203ENST00000403076 OSGIN1Q9UJX0 560 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 LYVE1Q9Y5Y7 322 aa16.39■□□□□ 0.21
SDC1-203ENST00000403076 ZFHX4Q86UP3 3567 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 TMED7-TICAM2A0A0A6YYA0 188 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 A0A1W2PRQ8 180 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 SHISA8B8ZZ34 492 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 ZNF23P17027 643 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 FUT4P22083 530 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 DNAJA1P31689 397 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms