RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TAS2R10Q9NYW0 307 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 PLA2G3Q9NZ20 509 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 PDP1Q9P0J1 537 aaPredicted RBP12.96□□□□□ -0.33
SKA1-202ENST00000398452 B4GALT7Q9UBV7 327 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 OAZ3Q9UMX2 235 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 A4GNTQ9UNA3 340 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 MGAQ8IWI9 3026 aa12.96□□□□□ -0.34
SKA1-202ENST00000398452 A0A1W2PRQ8 180 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 ELOA3DA6NLF2 546 aaPredicted RBP12.95□□□□□ -0.34
SKA1-202ENST00000398452 KLRC4-KLRK1H3BQV0 150 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 K7ENP7 123 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 FAAHO00519 579 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 CASQ2O14958 399 aaPredicted RBP12.95□□□□□ -0.34
SKA1-202ENST00000398452 CHP2O43745 196 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 OR10H3O60404 316 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 CDC40O60508 579 aaKnown RBP eCLIP12.95□□□□□ -0.34
SKA1-202ENST00000398452 C1QL1O75973 258 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 PNMTP11086 282 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 ACAA2P42765 397 aaKnown RBP12.95□□□□□ -0.34
SKA1-202ENST00000398452 PTDSS1P48651 473 aaKnown RBP12.95□□□□□ -0.34
SKA1-202ENST00000398452 DGCR6Q14129 220 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 TOMM20Q15388 145 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 EXOC3L2Q2M3D2 409 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 ELOA3BQ3SY89 546 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 OTUD3Q5T2D3 398 aaPredicted RBP12.95□□□□□ -0.34
SKA1-202ENST00000398452 LPCAT4Q643R3 524 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 SPINK14Q6IE38 97 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 SLC25A25Q6KCM7 469 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 INO80CQ6PI98 192 aaPredicted RBP12.95□□□□□ -0.34
SKA1-202ENST00000398452 TTC33Q6PID6 262 aaPredicted RBP12.95□□□□□ -0.34
SKA1-202ENST00000398452 CBLN3Q6UW01 205 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 GDF7Q7Z4P5 450 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 ZADH2Q8N4Q0 377 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 ATG16L2Q8NAA4 619 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 ELOA3Q8NG57 546 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 HAS2Q92819 552 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 ARSGQ96EG1 525 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 HS6ST2Q96MM7 605 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 FAM173AQ9BQD7 235 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 WFDC6Q9BQY6 131 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 MED11Q9P086 117 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 DKKL1Q9UK85 242 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 ACAD8Q9UKU7 415 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 SLC7A7Q9UM01 511 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 ICAM5Q9UMF0 924 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 LYVE1Q9Y5Y7 322 aa12.95□□□□□ -0.34
SKA1-202ENST00000398452 A0A0B4J2E0 115 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 A0A1B0GWA3 101 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 A0A1B0GX12 115 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 G3V3Y1 287 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 BCAS1O75363 584 aaPredicted RBP12.94□□□□□ -0.34
SKA1-202ENST00000398452 CBR3O75828 277 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 PRSS23O95084 383 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 ANXA8P13928 327 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 CDH2P19022 906 aaPredicted RBP12.94□□□□□ -0.34
SKA1-202ENST00000398452 CXCR1P25024 350 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 PEX2P28328 305 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 SLC1A3P43003 542 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 IL1RL1Q01638 556 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 PLGLB1Q02325 96 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 PPP1R8Q12972 351 aaKnown RBP12.94□□□□□ -0.34
SKA1-202ENST00000398452 LY6DQ14210 128 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 QPRTQ15274 297 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 MICAQ29983 383 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 IQCCQ4KMZ1 466 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 MDGA2Q7Z553 956 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 ZNF605Q86T29 641 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 PACRGLQ8N7B6 248 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 OR10G2Q8NGC3 310 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 PIGXQ8TBF5 258 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 RNF138Q8WVD3 245 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 ST8SIA1Q92185 356 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 RBM4BQ9BQ04 359 aaKnown RBP12.94□□□□□ -0.34
SKA1-202ENST00000398452 ARHGAP9Q9BRR9 750 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 RBM4Q9BWF3 364 aaKnown RBP12.94□□□□□ -0.34
SKA1-202ENST00000398452 SH2D2AQ9NP31 389 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 SERINC1Q9NRX5 453 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 ACER3Q9NUN7 267 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 ENOPH1Q9UHY7 261 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 PCDHGB7Q9Y5F8 929 aa12.94□□□□□ -0.34
SKA1-202ENST00000398452 SPIN1Q9Y657 262 aaPredicted RBP12.94□□□□□ -0.34
SKA1-202ENST00000398452 A0A087WZY1 265 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 IGLV3-32A0A0A0MS00 114 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 TRAV17A0A0B4J275 112 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 ACOT7O00154 380 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 FFAR1O14842 300 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 OIP5O43482 229 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 PEX1O43933 1283 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 CEACAM4O75871 244 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 SP1P08047 785 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 HTR2AP28223 471 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 GCKP35557 465 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 PTGDSP41222 190 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 EIF1P41567 113 aaKnown RBP12.93□□□□□ -0.34
SKA1-202ENST00000398452 DNASE1L1P49184 302 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 HMGA2P52926 109 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 IST1P53990 364 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 GAS1P54826 345 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 UGT2B15P54855 530 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 TAF11Q15544 211 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms