RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 RABL2AQ9UBK7 228 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 TCFL5Q9UL49 500 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 PCDHGB1Q9Y5G3 927 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 NPFFR2Q9Y5X5 522 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ESPL1Q14674 2120 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 FADDQ13158 208 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 MADCAM1Q13477 382 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 UBE2UQ5VVX9 321 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 SLC22A10Q63ZE4 541 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 SPINK14Q6IE38 97 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF585AQ6P3V2 769 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 WDR74Q6RFH5 385 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 KMT5CQ86Y97 462 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ZZZ3Q8IYH5 903 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 FCGR1BQ92637 280 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 MTERF3Q96E29 417 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF583Q96ND8 569 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 SLC38A2Q96QD8 506 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 IKZF5Q9H5V7 419 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 MTHFD2LQ9H903 347 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 NTNG1Q9Y2I2 539 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 PEX16Q9Y5Y5 336 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 KCNE3Q9Y6H6 103 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 CD59P13987 128 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 CDC42P60953 191 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 INSM1Q01101 510 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ST3GAL3Q11203 375 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 COL19A1Q14993 1142 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 OR2T5Q6IEZ7 315 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 DLEU7Q6UYE1 221 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.52□□□□□ -0.89
COL6A3-205ENST00000392004 KLHDC8BQ8IXV7 354 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ZADH2Q8N4Q0 377 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 OR5M9Q8NGP3 310 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 OR2T29Q8NH02 315 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF566Q969W8 418 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 AGAP4Q96P64 663 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 GNRHR2Q96P88 292 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 OR51B6Q9H340 312 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 AASSQ9UDR5 926 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 HSPE1-MOB4S4R3N1 261 aa9.52□□□□□ -0.89
COL6A3-205ENST00000392004 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 DDAH2O95865 285 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 ITGAMP11215 1152 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 PGCP20142 388 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 CTBP2P56545 445 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 EIF3IQ13347 325 aaKnown RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 ARMC4Q5T2S8 1044 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 ARTNQ5T4W7 220 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 OVCH1Q7RTY7 1134 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 RBM45Q8IUH3 476 aaKnown RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 NRMQ8IXM6 262 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 D2HGDHQ8N465 521 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 CYB561A3Q8NBI2 242 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 EXTL1Q92935 676 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 CCDC115Q96NT0 180 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 PRRG3Q9BZD7 231 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 SLIRPQ9GZT3 109 aaKnown RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 ELL3Q9HB65 397 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 ACOT13Q9NPJ3 140 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 SLC6A13Q9NSD5 602 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 UGT2A1Q9Y4X1 527 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 VPS13AQ96RL7 3174 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 H0YIG0 161 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 IGLV3-19P01714 112 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 LCKP06239 509 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 UBL4AP11441 157 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 PRG2P13727 222 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 DPP4P27487 766 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 GRPRP30550 384 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 CXCR4P61073 352 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 EEF1A1P68104 462 aaKnown RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 OR7A5Q15622 319 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 XKR7Q5GH72 579 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 RHBDD2Q6NTF9 364 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 BMP8AQ7Z5Y6 402 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 DNAJC22Q8N4W6 341 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 B3GNT7Q8NFL0 401 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 TMEM234Q8WY98 164 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF501Q96CX3 271 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 GAL3ST1Q99999 423 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 TSSK6Q9BXA6 273 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 NANSQ9NR45 359 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 RNF6Q9Y252 685 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 PMF1-BGLAPU3KQ54 211 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 DOCK4Q8N1I0 1966 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 UTS2O95399 124 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 SYNGR4O95473 234 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 STSP08842 583 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 CT62P0C5K7 136 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 PRR35P0CG20 571 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 CASP6P55212 293 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 SLC35A2P78381 396 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 IFITM2Q01629 132 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 NHLH1Q02575 133 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 AGAP6Q5VW22 663 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 SLX4IPQ5VYV7 408 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 MFSD12Q6NUT3 480 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms