RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ARL14Q8N4G2 192 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 ATP6V1C2Q8NEY4 427 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF524Q96C55 264 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 LMF2Q9BU23 707 aaKnown RBP12.33□□□□□ -0.44
CCDC3-202ENST00000378839 C11orf54Q9H0W9 315 aaPredicted RBP12.33□□□□□ -0.44
CCDC3-202ENST00000378839 CMC2Q9NRP2 79 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 WSB2Q9NYS7 404 aaPredicted RBP12.33□□□□□ -0.44
CCDC3-202ENST00000378839 LRIT1Q9P2V4 623 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 WDFY3Q8IZQ1 3526 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 OR10H2O60403 315 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 SAGP10523 405 aaPredicted RBP12.33□□□□□ -0.44
CCDC3-202ENST00000378839 NAT1P18440 290 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 CRMP1Q14194 572 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 GLCCI1Q86VQ1 547 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 CHAC2Q8WUX2 184 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 TPSD1Q9BZJ3 242 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 HOXD1Q9GZZ0 328 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 OR51V1Q9H2C8 321 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 ADGRL4Q9HBW9 690 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 PCDHGB2Q9Y5G2 931 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 CLCA3PQ9Y6N3 262 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 SPACA6W5XKT8 324 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 PCDH15Q96QU1 1955 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 TMEM131Q92545 1883 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 A0A0B4J293 547 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 ANKRD34BA5PLL1 514 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 RNF13O43567 381 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CLPSP04118 112 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CT45A8P0DMV1 189 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CT45A9P0DMV2 189 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CTSEP14091 401 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 S100A1P23297 94 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CCR5P51681 352 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 DEFA1P59665 94 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 DEFA3P59666 94 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF85Q03923 595 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CT45A2Q5DJT8 189 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 KIRREL2Q6UWL6 708 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 LINC00114Q6XXX2 140 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF655Q8N720 491 aaPredicted RBP12.32□□□□□ -0.44
CCDC3-202ENST00000378839 C17orf47Q8NEP4 570 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 OR4C3Q8NH37 302 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 NEIL3Q8TAT5 605 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 RIT1Q92963 219 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 RNF31Q96EP0 1072 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 KLHDC3Q9BQ90 382 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 PPP1R3EQ9H7J1 279 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CACYBPQ9HB71 228 aaKnown RBP12.32□□□□□ -0.44
CCDC3-202ENST00000378839 H2AFY2Q9P0M6 372 aaPredicted RBP12.32□□□□□ -0.44
CCDC3-202ENST00000378839 NPIPB9F8W1W9 429 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 AKAP8O43823 692 aaKnown RBP12.32□□□□□ -0.44
CCDC3-202ENST00000378839 HTR3AP46098 478 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 GABRA4P48169 554 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 OR2B6P58173 313 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 GXYLT1Q4G148 440 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 AGAP6Q5VW22 663 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF613Q6PF04 617 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 XKRXQ6PP77 449 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 ACBD7Q8N6N7 88 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 OR10H4Q8NGA5 316 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 AGAP4Q96P64 663 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 TTTY10Q9BZA0 68 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 MED31Q9Y3C7 131 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 A0A1W2PPC4 97 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 C4orf47A7E2U8 309 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 GTPBP1O00178 669 aaKnown RBP12.32□□□□□ -0.44
CCDC3-202ENST00000378839 SEC14L5O43304 696 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CHP2O43745 196 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CHRNB1P11230 501 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 MRPS15P82914 257 aaKnown RBP12.32□□□□□ -0.44
CCDC3-202ENST00000378839 DDI2Q5TDH0 399 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 CNIH2Q6PI25 160 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 BABAM2Q9NXR7 383 aa12.32□□□□□ -0.44
CCDC3-202ENST00000378839 DYRK3O43781 588 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF267Q14586 743 aaPredicted RBP12.31□□□□□ -0.44
CCDC3-202ENST00000378839 BMP8AQ7Z5Y6 402 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF321PQ8N8H1 164 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 OR52L1Q8NGH7 329 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 TMCO6Q96DC7 493 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF559Q9BR84 538 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 FN3KQ9H479 309 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 GSTK1Q9Y2Q3 226 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 OR5K4A6NMS3 321 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 BMP7P18075 431 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 MAOBP27338 520 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 GPR3P46089 330 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 GALEQ14376 348 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.31□□□□□ -0.44
CCDC3-202ENST00000378839 GID4Q8IVV7 300 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 DTX3Q8N9I9 347 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 OR6F1Q8NGZ6 308 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 SETD6Q8TBK2 473 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 GRIP1Q9Y3R0 1128 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 MTCH2Q9Y6C9 303 aa12.31□□□□□ -0.44
CCDC3-202ENST00000378839 TFECO14948 347 aaPredicted RBP12.3□□□□□ -0.44
CCDC3-202ENST00000378839 TMCC2O75069 709 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 CSF2P04141 144 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 HLA-DPB1P04440 258 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 SLC16A1P53985 500 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 GFERP55789 205 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms