RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 C1QTNF12Q5T7M4 302 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 ZNF540Q8NDQ6 660 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 APH1AQ96BI3 265 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 ZNF775Q96BV0 537 aaPredicted RBP12.17□□□□□ -0.46
VPS29-201ENST00000360579 CCDC126Q96EE4 140 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 C16orf58Q96GQ5 468 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 EGLN2Q96KS0 407 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 OR5B2Q96R09 309 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 TRMOQ9BU70 441 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 CDC42EP4Q9H3Q1 356 aaKnown RBP12.17□□□□□ -0.46
VPS29-201ENST00000360579 PIGUQ9H490 435 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 GSTO2Q9H4Y5 243 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 REEP4Q9H6H4 257 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 EML4Q9HC35 981 aaKnown RBP12.17□□□□□ -0.46
VPS29-201ENST00000360579 SERINC1Q9NRX5 453 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 TAS2R16Q9NYV7 291 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 ATP23Q9Y6H3 246 aa12.17□□□□□ -0.46
VPS29-201ENST00000360579 YLPM1P49750 1951 aaKnown RBP12.16□□□□□ -0.46
VPS29-201ENST00000360579 IGKV3D-15A0A087WSY6 115 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 LOC390937A0A1W2PQ73 354 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 GPR171O14626 319 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 WIPF1O43516 503 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 EIF4E2O60573 245 aaKnown RBP12.16□□□□□ -0.46
VPS29-201ENST00000360579 TGFAP01135 160 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 GSTA1P08263 222 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 PRPH2P23942 346 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 PHC1P78364 1004 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 SWT1Q5T5J6 900 aaKnown RBP12.16□□□□□ -0.46
VPS29-201ENST00000360579 ANKRD26P1Q6NSI1 321 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 C8orf74Q6P047 294 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 TIFABQ6ZNK6 161 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 MEX3DQ86XN8 651 aaKnown RBP12.16□□□□□ -0.46
VPS29-201ENST00000360579 CCNYL1Q8N7R7 359 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 OR5W2Q8NH69 310 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 CDS1Q92903 461 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 MUS81Q96NY9 551 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 CCT7Q99832 543 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 PRR14Q9BWN1 585 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 ZCCHC3Q9NUD5 404 aaKnown RBP12.16□□□□□ -0.46
VPS29-201ENST00000360579 SH3BP4Q9P0V3 963 aa12.16□□□□□ -0.46
VPS29-201ENST00000360579 NOSIPQ9Y314 301 aaKnown RBP12.16□□□□□ -0.46
VPS29-201ENST00000360579 A0A087WUV0 522 aaPredicted RBP12.15□□□□□ -0.46
VPS29-201ENST00000360579 NPIPB8E9PQR5 432 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 ZNF264O43296 627 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 OIP5O43482 229 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 IGHV3-9P01782 118 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 HMGN2P05204 90 aaKnown RBP12.15□□□□□ -0.46
VPS29-201ENST00000360579 KRT16P08779 473 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 DIO1P49895 249 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 ATP12AP54707 1039 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 SLC7A5Q01650 507 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 PDE7AQ13946 482 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 MLC1Q15049 377 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 KIAA0040Q15053 153 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 QPRTQ15274 297 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 IQCCQ4KMZ1 466 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 ABLIM2Q6H8Q1 611 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 C12orf54Q6X4T0 127 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 TMPPEQ6ZT21 453 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 MTDHQ86UE4 582 aaKnown RBP12.15□□□□□ -0.46
VPS29-201ENST00000360579 C17orf78Q8N4C9 275 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 TMCO5AQ8N6Q1 288 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 SLC25A43Q8WUT9 341 aaPredicted RBP12.15□□□□□ -0.46
VPS29-201ENST00000360579 ST8SIA1Q92185 356 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 ZHX1-C8orf76Q96EF9 292 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 FAM120BQ96EK7 910 aaKnown RBP12.15□□□□□ -0.46
VPS29-201ENST00000360579 OTUB1Q96FW1 271 aaPredicted RBP12.15□□□□□ -0.46
VPS29-201ENST00000360579 C1orf109Q9NX04 203 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 MALT1Q9UDY8 824 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 DTNAQ9Y4J8 743 aa12.15□□□□□ -0.46
VPS29-201ENST00000360579 MALRD1Q5VYJ5 2156 aa12.15□□□□□ -0.47
VPS29-201ENST00000360579 A0A1W2PR80 420 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 SULT2B1O00204 365 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 SLC28A1O00337 649 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 AKAP10O43572 662 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 SPRY1O43609 319 aaPredicted RBP12.14□□□□□ -0.47
VPS29-201ENST00000360579 LY6HO94772 140 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 H6PDO95479 791 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 UROSP10746 265 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 UBL4AP11441 157 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 ZNF23P17027 643 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 CCR4P51679 360 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 SNRPD2P62316 118 aaKnown RBP12.14□□□□□ -0.47
VPS29-201ENST00000360579 LASP1Q14847 261 aaKnown RBP12.14□□□□□ -0.47
VPS29-201ENST00000360579 GABRA6Q16445 453 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 CR1LQ2VPA4 569 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 TIGD2Q4W5G0 525 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 ZNF385BQ569K4 471 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 DCST2Q5T1A1 773 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS29-201ENST00000360579 CDC73Q6P1J9 531 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 ZNF572Q7Z3I7 529 aaPredicted RBP12.14□□□□□ -0.47
VPS29-201ENST00000360579 R3HCC1LQ7Z5L2 792 aaKnown RBP12.14□□□□□ -0.47
VPS29-201ENST00000360579 CNPY4Q8N129 248 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 ZNF614Q8N883 585 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 C1orf162Q8NEQ5 155 aaPredicted RBP12.14□□□□□ -0.47
VPS29-201ENST00000360579 RFWD2Q8NHY2 731 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 ADAMTS15Q8TE58 950 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 TMEM234Q8WY98 164 aa12.14□□□□□ -0.47
VPS29-201ENST00000360579 C3orf49Q96BT1 292 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms