RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 HCN1O60741 890 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 RPS4Y1P22090 263 aaKnown RBP11.85□□□□□ -0.51
CLK3-201ENST00000345005 ELAVL4P26378 380 aaKnown RBP11.85□□□□□ -0.51
CLK3-201ENST00000345005 CRYBB2P43320 205 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 PIN1Q13526 163 aaPredicted RBP11.85□□□□□ -0.51
CLK3-201ENST00000345005 KLHL22Q53GT1 634 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 SLC35F1Q5T1Q4 408 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 ZNF770Q6IQ21 691 aaPredicted RBP11.85□□□□□ -0.51
CLK3-201ENST00000345005 OR9Q2Q8NGE9 314 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 OR2I1PQ8NGU4 316 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 IFI44Q8TCB0 444 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.85□□□□□ -0.51
CLK3-201ENST00000345005 COQ7Q99807 217 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 RNF167Q9H6Y7 350 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 NIPAL2Q9H841 368 aa11.85□□□□□ -0.51
CLK3-201ENST00000345005 IGHV5-10-1A0A0J9YXX1 117 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 OR2W5A6NFC9 320 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 FABP12A6NFH5 140 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 B8ZZF3 427 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 MYL12BO14950 172 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 HYAL3O43820 417 aaPredicted RBP11.84□□□□□ -0.51
CLK3-201ENST00000345005 BRINP1O60477 761 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 CCNYL3P0C7X3 344 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 GAAP10253 952 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 UBL4AP11441 157 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 PRKCAP17252 672 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 SSTR4P31391 388 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 RFX2P48378 723 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 SLC9A3P48764 834 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 P2RX3P56373 397 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 QPRTQ15274 297 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 TAB1Q15750 504 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 GLYR1Q49A26 553 aaPredicted RBP11.84□□□□□ -0.51
CLK3-201ENST00000345005 YIF1BQ5BJH7 314 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 PRAMEF17Q5VTA0 474 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 KLHL17Q6TDP4 642 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 SPATC1Q76KD6 591 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 SLC34A3Q8N130 599 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 CLIP3Q96DZ5 547 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 ZC3HAV1LQ96H79 300 aaKnown RBP11.84□□□□□ -0.51
CLK3-201ENST00000345005 FUZQ9BT04 418 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 GTPBP2Q9BX10 602 aaKnown RBP11.84□□□□□ -0.51
CLK3-201ENST00000345005 SLC7A5P2Q9GIP4 190 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 OR10A5Q9H207 317 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 EVA1AQ9H8M9 152 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 MKKSQ9NPJ1 570 aaPredicted RBP11.84□□□□□ -0.51
CLK3-201ENST00000345005 RPRD1BQ9NQG5 326 aaKnown RBP11.84□□□□□ -0.51
CLK3-201ENST00000345005 PRODH2Q9UF12 536 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 ERVK-19Q9WJR5 959 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 GSTK1Q9Y2Q3 226 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 CHST2Q9Y4C5 530 aa11.84□□□□□ -0.51
CLK3-201ENST00000345005 TEX51A0A1B0GUA7 166 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 GXYLT2A0PJZ3 443 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 SYNDIG1LA6NDD5 238 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 AP3D1O14617 1153 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 GASTP01350 101 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 MYL9P24844 172 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 SDC2P34741 201 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 PGDP52209 483 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 RGS8P57771 180 aaPredicted RBP11.83□□□□□ -0.51
CLK3-201ENST00000345005 TAS2R41P59536 307 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 EEF1A1P68104 462 aaKnown RBP11.83□□□□□ -0.51
CLK3-201ENST00000345005 PSG6Q00889 435 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 FOXD4Q12950 439 aaPredicted RBP11.83□□□□□ -0.51
CLK3-201ENST00000345005 SOWAHCQ53LP3 525 aaPredicted RBP11.83□□□□□ -0.51
CLK3-201ENST00000345005 ARHGAP40Q5TG30 622 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 LCN1P1Q5VSP4 162 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 C12orf73Q69YU5 71 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 RHBDD2Q6NTF9 364 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 FIGNL1Q6PIW4 674 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 FAM131AQ6UXB0 335 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 ZNF836Q6ZNA1 936 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 IDO2Q6ZQW0 420 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 SLC51BQ86UW2 128 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 GRAMD2AQ8IUY3 354 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 FAM26EQ8N5C1 309 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 GTPBP3Q969Y2 492 aaKnown RBP11.83□□□□□ -0.51
CLK3-201ENST00000345005 LOXL4Q96JB6 756 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 VSTM2LQ96N03 204 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 POLR2J2Q9GZM3 115 aaKnown RBP11.83□□□□□ -0.51
CLK3-201ENST00000345005 ANKRD19PQ9H560 264 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 RNF121Q9H920 327 aa11.83□□□□□ -0.51
CLK3-201ENST00000345005 IGKV3D-11A0A0A0MRZ8 115 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 C17orf105B2RV13 164 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 HRKO00198 91 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 OR10H3O60404 316 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 TMCC2O75069 709 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 NID1P14543 1247 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 CPEP16870 476 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 CFL1P23528 166 aaKnown RBP11.83□□□□□ -0.52
CLK3-201ENST00000345005 AVPR2P30518 371 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 TRHRP34981 398 aaPredicted RBP11.83□□□□□ -0.52
CLK3-201ENST00000345005 PPP3R1P63098 170 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 ST3GAL3Q11203 375 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 ANGPT1Q15389 498 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 SEC23BQ15437 767 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 MINDY4Q4G0A6 757 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 PODNL1Q6PEZ8 512 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 CD300LDQ6UXZ3 194 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 ZNF767PQ75MW2 155 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms