RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 ROBO3Q96MS0 1386 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 SMIM35A0A1B0GVV1 85 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 SYN3O14994 580 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 TO15178 435 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 PGCP20142 388 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 SLC1A3P43003 542 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 XCR1P46094 333 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 AADACL3Q5VUY0 350 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 ZNF852Q6ZMS4 543 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 DAZLQ92904 295 aaKnown RBP12.11□□□□□ -0.47
USP47-202ENST00000339865 SLC29A1Q99808 456 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 DEFB126Q9BYW3 111 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 FBXO8Q9NRD0 319 aa12.11□□□□□ -0.47
USP47-202ENST00000339865 F10P00742 488 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 VIPR2P41587 438 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 ZNF92Q03936 586 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 PDZK1IP1Q13113 114 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 C6orf136Q5SQH8 315 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 PRSS55Q6UWB4 352 aaPredicted RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 DCP2Q8IU60 420 aaKnown RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 BPIFB2Q8N4F0 458 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 PARP12Q9H0J9 701 aaKnown RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 PADI3Q9ULW8 664 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 NACAE9PAV3 2078 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 EMC8O43402 210 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CT45A6P0DMU7 189 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CT45A5P0DMU8 189 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CT45A7P0DMV0 189 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CT45A8P0DMV1 189 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CT45A9P0DMV2 189 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 SNCAP37840 140 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 ACSM3Q53FZ2 586 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CT45A2Q5DJT8 189 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CT45A1Q5HYN5 189 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 SLC24A4Q8NFF2 622 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 DBF4BQ8NFT6 615 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 OR8J2Q8NGG1 315 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 GOT1L1Q8NHS2 421 aaPredicted RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 CT45A3Q8NHU0 189 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 RHBDD1Q8TEB9 315 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 SFT2D1Q8WV19 159 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 BRI3BPQ8WY22 251 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 SLCO5A1Q9H2Y9 848 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 V9GY05 133 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 P2RX3P56373 397 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 GABREP78334 506 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 DHRS11Q6UWP2 260 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 ZDHHC24Q6UX98 284 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 OVCH1Q7RTY7 1134 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 PLD6Q8N2A8 252 aaKnown RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 ZFP90Q8TF47 636 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 ZNF587Q96SQ5 575 aaPredicted RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 NEXMIFQ5QGS0 1516 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 OR6C76A6NM76 312 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 K7ERQ8 282 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 FBLP22087 321 aaKnown RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 SRP14P37108 136 aaKnown RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 TREML2Q5T2D2 321 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 ZNF704Q6ZNC4 412 aaPredicted RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 MED30Q96HR3 178 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 OR6C68A6NDL8 312 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 ANKRD30BLA7E2S9 258 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 SLC16A5O15375 505 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 SRPX2O60687 465 aaPredicted RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 FZD7O75084 574 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 ADH5P11766 374 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 IL2RGP31785 369 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 GIPRP48546 466 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 MANEAQ5SRI9 462 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 LRRC28Q86X40 367 aaPredicted RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 TFAP2BQ92481 460 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 NMNAT1Q9HAN9 279 aaPredicted RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 INIPQ9NRY2 104 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 PCDHAC2Q9Y5I4 1007 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 K7EQM0 130 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 NCR1O76036 304 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 ITGB5P18084 799 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 PTAFRP25105 342 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 DNAJB13P59910 316 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CDK5R2Q13319 367 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CAMK2BQ13554 666 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 PTPRCAPQ14761 206 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 APOBEC3HQ6NTF7 200 aaKnown RBP12.1□□□□□ -0.47
USP47-202ENST00000339865 C19orf35Q6ZS72 473 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 CDHR3Q6ZTQ4 885 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 OR2M2Q96R28 347 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 DHRS9Q9BPW9 319 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 ZNF586Q9NXT0 402 aa12.1□□□□□ -0.47
USP47-202ENST00000339865 OR2M5A3KFT3 312 aa12.09□□□□□ -0.47
USP47-202ENST00000339865 RNF212BA8MTL3 300 aa12.09□□□□□ -0.47
USP47-202ENST00000339865 AP1G1O43747 822 aa12.09□□□□□ -0.47
USP47-202ENST00000339865 CNR1P21554 472 aa12.09□□□□□ -0.47
USP47-202ENST00000339865 AADACP22760 399 aa12.09□□□□□ -0.47
USP47-202ENST00000339865 GCH1P30793 250 aa12.09□□□□□ -0.47
USP47-202ENST00000339865 KRTDAPP60985 99 aa12.09□□□□□ -0.47
USP47-202ENST00000339865 DRICH1Q6PGQ1 229 aaPredicted RBP12.09□□□□□ -0.47
USP47-202ENST00000339865 MEX3DQ86XN8 651 aaKnown RBP12.09□□□□□ -0.47
USP47-202ENST00000339865 CERS5Q8N5B7 392 aa12.09□□□□□ -0.47
USP47-202ENST00000339865 SECTM1Q8WVN6 248 aa12.09□□□□□ -0.47
USP47-202ENST00000339865 DIO2Q92813 273 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms