RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 EFCAB9A8MZ26 197 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 PIPP12273 146 aaPredicted RBP20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 CTBP2P56545 445 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 RNF4P78317 190 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 LINC00114Q6XXX2 140 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 MARCH3Q86UD3 253 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 SLC34A3Q8N130 599 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 FAM71CQ8NEG0 241 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 C7orf57Q8NEG2 295 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 FCGR1BQ92637 280 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 SLC35B4Q969S0 331 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 OTULINQ96BN8 352 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 PLEKHA8Q96JA3 519 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 GPN2Q9H9Y4 310 aaPredicted RBP20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 SIGLEC7Q9Y286 467 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 TEX51A0A1B0GUA7 166 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 FAM183AA6NL82 134 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 ZNF264O43296 627 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 TSPAN2O60636 221 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 HBQ1P09105 142 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 SLC25A30Q5SVS4 291 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 MEDAGQ5VYS4 303 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 PAQR6Q6TCH4 344 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 ZNF441Q8N8Z8 693 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 BBS1Q8NFJ9 593 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 BRIX1Q8TDN6 353 aaKnown RBP20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 C3orf49Q96BT1 292 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 TMEM80Q96HE8 168 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 CRB3Q9BUF7 120 aa20.55■□□□□ 0.88
PDLIM2-203ENST00000339162 VSTM2BA6NLU5 285 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 BMP7P18075 431 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 TGFBR1P36897 503 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 VBP1P61758 197 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 IL11RAQ14626 422 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 FCRLBQ6BAA4 426 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 PAPD4Q6PIY7 484 aaKnown RBP20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 SHFQ7M4L6 423 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 CLDN22Q8N7P3 220 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 OR5M3Q8NGP4 307 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 TNFRSF13CQ96RJ3 184 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 RXFP3Q9NSD7 469 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 TMEM5Q9Y2B1 443 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 COL5A1P20908 1838 aaPredicted RBP20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 CPNE3O75131 537 aaKnown RBP20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 GABARAPO95166 117 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 ADH7P40394 386 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 SH3BGRP55822 239 aaPredicted RBP20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 OAFQ86UD1 273 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 SLCO6A1Q86UG4 719 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 LRRC17Q8N6Y2 441 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 NFAM1Q8NET5 270 aaPredicted RBP20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 OR52L1Q8NGH7 329 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 PRRG3Q9BZD7 231 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 KIF26BQ2KJY2 2108 aa20.54■□□□□ 0.88
PDLIM2-203ENST00000339162 SAGE2PA6NJ88 616 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 OR6C76A6NM76 312 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 TO15178 435 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 ZNF354AO60765 605 aaPredicted RBP20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 RBM34P42696 430 aaKnown RBP20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 ARMCX4Q5H9R4 360 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 OR52I1Q8NGK6 324 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 WDR77Q9BQA1 342 aaPredicted RBP20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 IFT27Q9BW83 186 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 TEX12Q9BXU0 123 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 A0A087WUJ7 227 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 BHLHE40O14503 412 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 PRODHO43272 600 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 HCRTR2O43614 444 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 MST1P26927 711 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 NCS1P62166 190 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 ZNF117Q03924 483 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 NCF4Q15080 339 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 CYP4Z2PQ8N1L4 340 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 LGALS12Q96DT0 336 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 RNFT2Q96EX2 444 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 DEPDC7Q96QD5 511 aa20.53■□□□□ 0.88
PDLIM2-203ENST00000339162 ANKRD33BA6NCL7 494 aa20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 CLPPQ16740 277 aaPredicted RBP20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 B3GLCTQ6Y288 498 aa20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 ZNF440Q8IYI8 595 aa20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 NDNFQ8TB73 568 aa20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 DNAJA4Q8WW22 397 aaPredicted RBP20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 NACC2Q96BF6 587 aa20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 HSPBAP1Q96EW2 488 aa20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 MED20Q9H944 212 aa20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 HINT3Q9NQE9 182 aaKnown RBP20.52■□□□□ 0.88
PDLIM2-203ENST00000339162 KDM4EB2RXH2 506 aaPredicted RBP20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 SCO2O43819 266 aa20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 PTP4A3O75365 173 aa20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 RCBTB2O95199 551 aa20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 ACP1P24666 158 aa20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 CLDN6P56747 220 aa20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 TRA2AQ13595 282 aaKnown RBP eCLIP20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 GXYLT1Q4G148 440 aa20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 MRPL14Q6P1L8 145 aaKnown RBP20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 DBX2Q6ZNG2 339 aa20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 CPOQ8IVL8 374 aa20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 C9orf43Q8TAL5 461 aaPredicted RBP20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 CRELD1Q96HD1 420 aa20.51■□□□□ 0.87
PDLIM2-203ENST00000339162 TBL1XR1Q9BZK7 514 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms