RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 TMEM106CQ9BVX2 250 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ANGPTL4Q9BY76 406 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 DCP1AQ9NPI6 582 aaPredicted RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM260Q9NX78 707 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 HAO2Q9NYQ3 351 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PADI1Q9ULC6 663 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ANGPT4Q9Y264 503 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 USP3Q9Y6I4 520 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TECPR2O15040 1411 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TRAV39A0A0B4J263 110 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CLEC18AA5D8T8 446 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 LDLRAD4O15165 306 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TNFSF15O95150 251 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 RLN1P04808 185 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CSN2P05814 226 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CYC1P08574 325 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SNRNP70P08621 437 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 FAM86B2P0C5J1 330 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SLC35E2BP0CK96 405 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 RPL3P39023 403 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PBX3P40426 434 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF140P52738 457 aaPredicted RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 F2RL1P55085 397 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 C1QTNF8P60827 252 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 IL13RA1P78552 427 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CNN3Q15417 329 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PRAMEF8Q5VWM4 474 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PRAMEF7Q5VXH5 474 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 C22orf42Q6IC83 251 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 APOBEC3HQ6NTF7 200 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM71Q6P5X7 295 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CD300LGQ6UXG3 332 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SERPINA11Q86U17 422 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 MRPL41Q8IXM3 137 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 FAM26EQ8N5C1 309 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 C11orf42Q8N5U0 333 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PNLDC1Q8NA58 520 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CLEC18CQ8NCF0 446 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SMIM4Q8WVI0 70 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PHYHIPQ92561 330 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF382Q96SR6 550 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SPXQ9BT56 116 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SUCNR1Q9BXA5 334 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ARV1Q9H2C2 271 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PRO1933Q9H354 126 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SERINC1Q9NRX5 453 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM184CQ9NVA4 438 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 VAX2Q9UIW0 290 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PCDHB8Q9UN66 801 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 FAM96BQ9Y3D0 163 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CLDN16Q9Y5I7 305 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 A0A0U1RQS6 177 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM200CA6NKL6 621 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PPIHO43447 177 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ADAP1O75689 374 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TK1P04183 234 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 NAA10P41227 235 aaPredicted RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TTPAP49638 278 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 MECP2P51608 486 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 MAPK14Q16539 360 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PSG3Q16557 428 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 KCNMB1Q16558 191 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TIGD5Q53EQ6 642 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SIRPB2Q5JXA9 342 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SLC25A30Q5SVS4 291 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CYB5R2Q6BCY4 276 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ADAM5Q6NVV9 412 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 FBXO46Q6PJ61 603 aaPredicted RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 B3GLCTQ6Y288 498 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CBLL1Q75N03 491 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CILP2Q8IUL8 1156 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 C1orf87Q8N0U7 546 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 LGI4Q8N135 537 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR1S2Q8NGQ3 325 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR52P1PQ8NH57 321 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 METTL21AQ8WXB1 218 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CDK15Q96Q40 435 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SMAD5Q99717 465 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OMDQ99983 421 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 LGR4Q9BXB1 951 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 FAM117AQ9C073 453 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF430Q9H8G1 570 aaPredicted RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 BARX1Q9HBU1 254 aaPredicted RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 MKKSQ9NPJ1 570 aaPredicted RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 B3GAT2Q9NPZ5 323 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 H3BRB1 525 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CDIPTO14735 213 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PCDH8O95206 1070 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 FARS2O95363 451 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR5H8P0DN80 308 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CD80P33681 288 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SCNN1AP37088 669 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 STXBP1P61764 594 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CDK6Q00534 326 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 IRF9Q00978 393 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PRKCZQ05513 592 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ACTBL2Q562R1 376 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 NCMAPQ5T1S8 102 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR6B2Q6IFH4 312 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms