RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 ANKRD9Q96BM1 317 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 FAM46AQ96IP4 442 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 RUNDC3BQ96NL0 473 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 FRG2BQ96QU4 278 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 RUFY1Q96T51 708 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZKSCAN3Q9BRR0 538 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 RIOK2Q9BVS4 552 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CST11Q9H112 138 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MED28Q9H204 178 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SYNCQ9H7C4 482 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 REEP1Q9H902 201 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MRPL47Q9HD33 250 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MYNNQ9NPC7 610 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PDP1Q9P0J1 537 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 IMPACTQ9P2X3 320 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SLC23A2Q9UGH3 650 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CHORDC1Q9UHD1 332 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PITPNC1Q9UKF7 332 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CORO2BQ9UQ03 480 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SH2B3Q9UQQ2 575 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PDE10AQ9Y233 779 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GPR55Q9Y2T6 319 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 LAMA2P24043 3122 aaKnown RBP1.26□□□□□ -2.21
LINC00643-201ENST00000334389 WDR91A4D1P6 747 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 PINLYPA6NC86 204 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 CLDN25C9JDP6 229 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 LOC110117498-PIK3R3F6TDL0 507 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 H0Y3Z8 333 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 H0YIV9 168 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 CHMP2AO43633 222 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 DTNBO60941 627 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 SEC14L2O76054 403 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 DIRAS3O95661 229 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 IGLV2-11P01706 119 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 HNRNPCP07910 306 aaKnown RBP eCLIP1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF14P17017 642 aaPredicted RBP1.26□□□□□ -2.21
LINC00643-201ENST00000334389 NPR2P20594 1047 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ACVR1BP36896 505 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 GDNFP39905 211 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ACOT2P49753 483 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 SULT1E1P49888 294 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 NRG3P56975 720 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 KLF3P57682 345 aaPredicted RBP1.26□□□□□ -2.21
LINC00643-201ENST00000334389 DLK1P80370 383 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 MVKQ03426 396 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 PPP3CAQ08209 521 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF616Q08AN1 781 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 TAB1Q15750 504 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF750Q32MQ0 723 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 MARC1Q5VT66 337 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 NKAIN2Q5VXU1 208 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 KLC3Q6P597 504 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 SBSNQ6UWP8 590 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 CES3Q6UWW8 571 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 HSDL2Q6YN16 418 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 Q6ZSV7 163 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 C3orf62Q6ZUJ4 267 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 NET1Q7Z628 596 aaPredicted RBP1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF101Q8IZC7 436 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 STPG3Q8N7X2 389 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ANKRD53Q8N9V6 530 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 PNLDC1Q8NA58 520 aaKnown RBP1.26□□□□□ -2.21
LINC00643-201ENST00000334389 MNS1Q8NEH6 495 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 OR4C13Q8NGP0 309 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 OR6Q1Q8NGQ2 317 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 SGCDQ92629 289 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 CORO2AQ92828 525 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 NCLNQ969V3 563 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 RERGQ96A58 199 aaPredicted RBP1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ESAMQ96AP7 390 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 PYCR2Q96C36 320 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 SIGLEC10Q96LC7 697 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 TBX15Q96SF7 602 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 RNF5Q99942 180 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 CCDC28BQ9BUN5 200 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 EFCAB11Q9BUY7 163 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 DEFB126Q9BYW3 111 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 GANQ9H2C0 597 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 HIPK2Q9H2X6 1198 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 METTL17Q9H7H0 456 aaPredicted RBP1.26□□□□□ -2.21
LINC00643-201ENST00000334389 IL26Q9NPH9 171 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 PARVAQ9NVD7 372 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 DDIT4Q9NX09 232 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 TECRQ9NZ01 308 aaKnown RBP1.26□□□□□ -2.21
LINC00643-201ENST00000334389 CHMP5Q9NZZ3 219 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF391Q9UJN7 358 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 CES1P1Q9UKY3 287 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 DNAJC16Q9Y2G8 782 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ZDHHC9Q9Y397 364 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 WDR87Q6ZQQ6 2873 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 SZT2Q5T011 3432 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 NBEAQ8NFP9 2946 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 A0A1W2PPE3 182 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 PRSS37A4D1T9 235 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 TRIM49D1C9J1S8 452 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 H0YGG7 62 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 STX16-NPEPL1H3BU86 382 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 MANBAO00462 879 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 ITGB1BP1O14713 200 aa1.26□□□□□ -2.21
LINC00643-201ENST00000334389 CETN3O15182 167 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms