RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ERAL1O75616 437 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 HPP00738 406 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 HIST1H2ABP04908 130 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 HMGN1P05114 100 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 GIPP09681 153 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 VSIG10L2P0DP72 767 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 CKBP12277 381 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 AGERQ15109 404 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 CSRP2Q16527 193 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 TP53I3Q53FA7 332 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 PABPC1L2AQ5JQF8 200 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF697Q5TEC3 545 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 HACD4Q5VWC8 232 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF783Q6ZMS7 281 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF620Q6ZNG0 422 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 FAM83HQ6ZRV2 1179 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 HIST3H2AQ7L7L0 130 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 THEM6Q8WUY1 208 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 HIST1H2ACQ93077 130 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 INTS12Q96CB8 462 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 DPH1Q9BZG8 443 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 NKX6-2Q9C056 277 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 PITHD1Q9GZP4 211 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC25A18Q9H1K4 315 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 ACTR10Q9NZ32 417 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 PRKAG2Q9UGJ0 569 aa12.48□□□□□ -0.41
CCDC88C-201ENST00000331194 A0A1B0GUH1 482 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 GPR31O00270 319 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 PLPP2O43688 288 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 SIGLEC6O43699 453 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 HMGN2P05204 90 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 IL9P15248 144 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 C4BPBP20851 252 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 EPHA4P54764 986 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 LGALS3BPQ08380 585 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 TMEM115Q12893 351 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 DYRK1AQ13627 763 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 GPNMBQ14956 572 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 TRAM2Q15035 370 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 NIPAL3Q6P499 406 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 PXKQ7Z7A4 578 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 CCDC36Q8IYA8 594 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 OR2T33Q8NG76 320 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 OR5M9Q8NGP3 310 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 DIO2Q92813 273 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 PEX11GQ96HA9 241 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 OR14A2Q96R54 314 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 TRMT61BQ9BVS5 477 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 IFT27Q9BW83 186 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 PCOLCE2Q9UKZ9 415 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 SCN10AQ9Y5Y9 1956 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 ANKRD61A6NGH8 418 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 OR6C65A6NJZ3 312 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 PYCARD-AS1I3L0S3 204 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 IFNGR1P15260 489 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 BSGP35613 385 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 RAP2BP61225 183 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 SNRPD1P62314 119 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 S100A12P80511 92 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 DUSP2Q05923 314 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 LTB4RQ15722 352 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC24A5Q71RS6 500 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 MEPCEQ7L2J0 689 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 CBLN2Q8IUK8 224 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 CDH26Q8IXH8 852 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 ZFP82Q8N141 532 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF433Q8N7K0 673 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 FAM98AQ8NCA5 519 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 OR10K1Q8NGX5 313 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 NDC1Q9BTX1 674 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 HMX1Q9NP08 348 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 LHX9Q9NQ69 397 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 TAS2R3Q9NYW6 316 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 TRIOO75962 3097 aa12.47□□□□□ -0.41
CCDC88C-201ENST00000331194 CHD9Q3L8U1 2897 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 A0A087WV48 116 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 A0A1W2PQ45 241 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 A0A1W2PQY0 241 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 H7C2Y5 167 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 CREBL2O60519 120 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 GREM1O60565 184 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 FCMRO60667 390 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 MT-ND5P03915 603 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 PPP3CBP16298 524 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 FXYD6P3P58550 94 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 LRRN1Q6UXK5 716 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 TPRA1Q86W33 373 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 CMTM8Q8IZV2 173 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 OR51L1Q8NGJ5 315 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 KISS1RQ969F8 398 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 LCORQ96JN0 433 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 PDCD1LG2Q9BQ51 273 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 BCL2L14Q9BZR8 327 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 COA4Q9NYJ1 87 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 TCF20Q9UGU0 1960 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 OR2A4O95047 310 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 PCDH8O95206 1070 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 GALP22466 123 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 PSMB5P28074 263 aa12.46□□□□□ -0.41
CCDC88C-201ENST00000331194 HOXA1P49639 335 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms