RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PIGFQ07326 219 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 RNF151Q2KHN1 245 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 AAK1Q2M2I8 961 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 ARSIQ5FYB1 569 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 FBXL12Q9NXK8 326 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 NME4O00746 187 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 FASLGP48023 281 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 POU3F4P49335 361 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 CLDN6P56747 220 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF322Q6U7Q0 402 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 SIDT1Q9NXL6 827 aaKnown RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 PHIPQ8WWQ0 1821 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 ALX3O95076 343 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 FOXK1P85037 733 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 TTLL10Q6ZVT0 673 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 NETO1Q8TDF5 533 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF300Q96RE9 604 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 CCDC85CA6NKD9 419 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 OR2F2O95006 317 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 ARRB1P49407 418 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 MRPS34P82930 218 aaKnown RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 OR2F1Q13607 317 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 SERTAD2Q14140 314 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 MFSD6LQ8IWD5 586 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 TANKQ92844 425 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 MT-ND4P03905 459 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 DCTP40126 519 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 MC3RP41968 323 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 PAPOLGQ9BWT3 736 aaKnown RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 HBQ1P09105 142 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 PAX6P26367 422 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF791Q3KP31 576 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 TSTD1Q8NFU3 115 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 RAB3CQ96E17 227 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 RICTORQ6R327 1708 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 GVINP1Q7Z2Y8 2422 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF648Q5T619 568 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 PQLC3Q8N755 202 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 OR4E2Q8NGC2 313 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 TOMM40LQ969M1 308 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 BSCL2Q96G97 398 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 NKX3-1Q99801 234 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-201ENST00000328333 SYNPO2LQ9H987 977 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 H7BY64 318 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 PEX10O60683 326 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 SSBP1Q04837 148 aaKnown RBP13.44□□□□□ -0.26
COL7A1-201ENST00000328333 COTL1Q14019 142 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 CDRT4Q8N9R6 151 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 NAXEQ8NCW5 288 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 BCAS3Q9H6U6 928 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 PELI2Q9HAT8 420 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 NDRG3Q9UGV2 375 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 HRH3Q9Y5N1 445 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 PUS1Q9Y606 427 aaKnown RBP eCLIP13.44□□□□□ -0.26
COL7A1-201ENST00000328333 GLOD5A6NK44 160 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 B4GALT2O60909 372 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 OR2C1O95371 312 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 FABP1P07148 127 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 UQCC3Q6UW78 93 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 CLDN19Q8N6F1 224 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 TTTY10Q9BZA0 68 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 TMPRSS5Q9H3S3 457 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 SURF4O15260 269 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 ALPLP05186 524 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 NR0B1P51843 470 aaKnown RBP13.44□□□□□ -0.26
COL7A1-201ENST00000328333 RNF4P78317 190 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 TMEM115Q12893 351 aaPredicted RBP13.44□□□□□ -0.26
COL7A1-201ENST00000328333 HNF4GQ14541 408 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 P2RY14Q15391 338 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 PLK5Q496M5 336 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 NXPE4Q6UWF7 544 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 FAM217AQ8IXS0 508 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF610Q8N9Z0 462 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 OR13F1Q8NGS4 319 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 SCAMP5Q8TAC9 235 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 EXOSC3Q9NQT5 275 aaKnown RBP13.44□□□□□ -0.26
COL7A1-201ENST00000328333 GPR37L1O60883 481 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 HLA-DMAP28067 261 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 CXADRP78310 365 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 OR4C11Q6IEV9 310 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 CPOQ8IVL8 374 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 GPR150Q8NGU9 434 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 GGHQ92820 318 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 FOCADQ5VW36 1801 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 DHRS4L1P0CG22 281 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 DTYMKP23919 212 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 LTBQ06643 244 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 SLC10A1Q14973 349 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 SLC22A6Q4U2R8 563 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 UNC50Q53HI1 259 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 EOGTQ5NDL2 527 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 FAM160A2Q8N612 972 aaPredicted RBP13.44□□□□□ -0.26
COL7A1-201ENST00000328333 SCPEP1Q9HB40 452 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 PURGQ9UJV8 347 aaKnown RBP13.44□□□□□ -0.26
COL7A1-201ENST00000328333 TGFBR3Q03167 851 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 ASAH1Q13510 395 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 SYPL2Q5VXT5 272 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 PRSS58Q8IYP2 241 aa13.44□□□□□ -0.26
COL7A1-201ENST00000328333 RNF113BQ8IZP6 322 aaKnown RBP13.44□□□□□ -0.26
COL7A1-201ENST00000328333 GSX2Q9BZM3 304 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms