RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 RHBDD3Q9Y3P4 386 aa16.27■□□□□ 0.19
SYNPO-201ENST00000307662 TRAV27A0A087WT01 109 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 GGT3PA6NGU5 568 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 DRGXA6NNA5 263 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 HSBP1L1C9JCN9 74 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 GPRIN2O60269 458 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 HBA1P69905 142 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 SLC5A12Q1EHB4 618 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 AVPI1Q5T686 147 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 TMEM40Q8WWA1 233 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 FAM71F1Q96KD3 344 aaPredicted RBP16.26■□□□□ 0.19
SYNPO-201ENST00000307662 PITHD1Q9GZP4 211 aaPredicted RBP16.26■□□□□ 0.19
SYNPO-201ENST00000307662 ZNF281Q9Y2X9 895 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 TMEM82A0PJX8 343 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 E9PI62 339 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 SMLR1H3BR10 107 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 M0QZQ0 153 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 CSO75390 466 aaKnown RBP16.26■□□□□ 0.19
SYNPO-201ENST00000307662 IQCF3P0C7M6 154 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 SYN1P17600 705 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 TRA2BP62995 288 aaKnown RBP16.26■□□□□ 0.19
SYNPO-201ENST00000307662 GLO1Q04760 184 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 DCST2Q5T1A1 773 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 TMEM244Q5VVB8 128 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 OR2T11Q8NH01 316 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 TMEM174Q8WUU8 243 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 OR5M11Q96RB7 305 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 TMEM100Q9NV29 134 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 DIMT1Q9UNQ2 313 aaKnown RBP16.26■□□□□ 0.19
SYNPO-201ENST00000307662 ATP6V1G2-DDX39BF2Z307 99 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 PRICKLE3O43900 615 aaPredicted RBP16.26■□□□□ 0.19
SYNPO-201ENST00000307662 UBL3O95164 117 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 LIPAP38571 399 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 LRRTM3Q86VH5 581 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 SULF2Q8IWU5 870 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 PXT1Q8NFP0 134 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 CCDC88AQ3V6T2 1871 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 A8MXE2 369 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 RHOP08100 348 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 ZNF169Q14929 603 aaPredicted RBP16.26■□□□□ 0.19
SYNPO-201ENST00000307662 HMGN3Q15651 99 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 HYAL4Q2M3T9 481 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 SLC7A6Q92536 515 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 PLCXD1Q9NUJ7 323 aa16.26■□□□□ 0.19
SYNPO-201ENST00000307662 ZNF443Q9Y2A4 671 aaPredicted RBP16.26■□□□□ 0.19
SYNPO-201ENST00000307662 PEX12O00623 359 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 OR7A17O14581 309 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 SDC3O75056 442 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 RAC2P15153 192 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 PRKAR1BP31321 381 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 LDLRAD1Q5T700 205 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 SLC22A25Q6T423 547 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 GAREM2Q75VX8 874 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 ISL2Q96A47 359 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 SLC19A3Q9BZV2 496 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 BACE2Q9Y5Z0 518 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 SLC6A8P48029 635 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 CDK3Q00526 305 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 SFXN4Q6P4A7 337 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 MEX3BQ6ZN04 569 aaKnown RBP16.25■□□□□ 0.19
SYNPO-201ENST00000307662 VRK2Q86Y07 508 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 OR5D14Q8NGL3 314 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 SLC2A12Q8TD20 617 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 ZNF582Q96NG8 517 aaPredicted RBP16.25■□□□□ 0.19
SYNPO-201ENST00000307662 ARPC5LQ9BPX5 153 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 GPATCH2Q9NW75 528 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 HHLA2Q9UM44 414 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 DNAJC25-GNG10A0A024R161 153 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 SLC22A23A1A5C7 686 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 CCR7P32248 378 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 PIGAP37287 484 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 TPMTP51580 245 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 TDGQ13569 410 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 GPR139Q6DWJ6 353 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 OR8J2Q8NGG1 315 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 FANCFQ9NPI8 374 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 MCCD1P59942 119 aaPredicted RBP16.25■□□□□ 0.19
SYNPO-201ENST00000307662 SYPL1Q16563 259 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 TMEM164Q5U3C3 297 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 NIPAL3Q6P499 406 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 ST7LQ8TDW4 575 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 NPRL2Q8WTW4 380 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 SLC25A31Q9H0C2 315 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 TCEAL2Q9H3H9 227 aaPredicted RBP16.25■□□□□ 0.19
SYNPO-201ENST00000307662 EVA1AQ9H8M9 152 aa16.25■□□□□ 0.19
SYNPO-201ENST00000307662 CXXC1Q9P0U4 656 aaPredicted RBP16.25■□□□□ 0.19
SYNPO-201ENST00000307662 NPIPA5A0A0B4J1W7 369 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 NPIPA7E9PJI5 369 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 NPIPA8P0DM63 369 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 CD79BP40259 229 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 CX3CR1P49238 355 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 HTR4Q13639 388 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 GGTA1PQ4G0N0 100 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 RTP2Q5QGT7 225 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 RAET1LQ5VY80 246 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 FOXB2Q5VYV0 432 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 GPR137CQ8N3F9 429 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 OR4D6Q8NGJ1 314 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 ZBED3Q96IU2 234 aaPredicted RBP16.24■□□□□ 0.19
SYNPO-201ENST00000307662 OR7D2Q96RA2 312 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms