RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 MTIF3Q9H2K0 278 aaKnown RBP11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 TMEM14AQ9Y6G1 99 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 GRIN3BO60391 1043 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 TCRBP04435 133 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 UBL4AP11441 157 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 MOGAT2Q3SYC2 334 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 TMEM156Q8N614 296 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 UROC1Q96N76 676 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 SCGB2A1O75556 95 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 CTRB1P17538 263 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 CD80P33681 288 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 CTRB2Q6GPI1 263 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 SLC24A4Q8NFF2 622 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 CDKN2AIPNLQ96HQ2 116 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 MTCH1Q9NZJ7 389 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 TRAPPC6AO75865 159 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 GABRR2P28476 465 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 EEF1A2Q05639 463 aaKnown RBP11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 SGCBQ16585 318 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 TRIM61Q5EBN2 209 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 NHSL2Q5HYW2 709 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 FAM3CQ92520 227 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 UHRF2Q96PU4 802 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 ASB6Q9NWX5 421 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 NPFFR2Q9Y5X5 522 aa11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 CHD3Q12873 2000 aaKnown RBP11.08□□□□□ -0.64
SHROOM3-201ENST00000296043 VNN1O95497 513 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SEC61A1P61619 476 aaKnown RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 GTDC1Q4AE62 458 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 CATSPEREQ5SY80 951 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SYPL2Q5VXT5 272 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 FBXW12Q6X9E4 464 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ZNF610Q8N9Z0 462 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 PNPLA2Q96AD5 504 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ZNF599Q96NL3 588 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 PIGVQ9NUD9 493 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 NNATQ16517 81 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SOWAHAQ2M3V2 549 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ADIPOR2Q86V24 386 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 MAML2Q8IZL2 1156 aaPredicted RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 MFSD9Q8NBP5 474 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SPNS1Q9H2V7 528 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ZNF385DQ9H6B1 395 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 NOTCH3Q9UM47 2321 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 POP4O95707 220 aaKnown RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 BCKDHBP21953 392 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ADCYAP1R1P41586 468 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 CCL23P55773 120 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SH3BP2P78314 561 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ATPAF1Q5TC12 328 aaPredicted RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 OR4K17Q8NGC6 315 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ARNTL2Q8WYA1 636 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 CABLES2Q9BTV7 478 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 RSRP1Q9BUV0 290 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 M0R3H8 397 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SLC10A1Q14973 349 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 OR14C36Q8NHC7 312 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 PCP4P48539 62 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 COL9A2Q14055 689 aaPredicted RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 PCBP1Q15365 356 aaKnown RBP eCLIP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 TXLNGYQ9BZA5 131 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 DDX31Q9H8H2 851 aaKnown RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 G3V3Q6 166 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ATP1B2P14415 290 aaPredicted RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 FAM74A1Q5RGS3 127 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 EXOSC6Q5RKV6 272 aaKnown RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ZFPM1Q8IX07 1006 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 L3MBTL4Q8NA19 623 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ZNF461Q8TAF7 563 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 TMED6Q8WW62 240 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SORT1Q99523 831 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 KCNIP1Q9NZI2 227 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ERVW-1Q9UQF0 538 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 A0A1W2PQ45 241 aaPredicted RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 A0A1W2PQY0 241 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 NFYBP25208 207 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 MPGP29372 298 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 GABRA5P31644 462 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 RPS19P39019 145 aaKnown RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 RPL29P47914 159 aaKnown RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SEC13P55735 322 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 RPP30P78346 268 aaKnown RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 IQCJQ1A5X6 159 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SHEQ5VZ18 495 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 FCRLAQ7L513 359 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 PQLC3Q8N755 202 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 FBXW5Q969U6 566 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 TMEM18Q96B42 140 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 SLC39A9Q9NUM3 307 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 DCAF13Q9NV06 445 aaKnown RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 ATRNL1Q5VV63 1379 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 CBX7O95931 251 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 CLDN12P56749 244 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 OR2G6Q5TZ20 316 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 METTL27Q8N6F8 245 aaPredicted RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 LMX1AQ8TE12 382 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 RASD2Q96D21 266 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 DPH1Q9BZG8 443 aa11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 AKIRIN1Q9H9L7 192 aaPredicted RBP11.07□□□□□ -0.64
SHROOM3-201ENST00000296043 Q9N2J8 555 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms