RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 EXOSC3Q9NQT5 275 aaKnown RBP15.25■□□□□ 0.03
CCDC40-201ENST00000269318 MRTO4Q9UKD2 239 aaKnown RBP15.25■□□□□ 0.03
CCDC40-201ENST00000269318 CARD8Q9Y2G2 431 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 A0A1B0GVG6 124 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 SYNDIG1LA6NDD5 238 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 SCDO00767 359 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 MYL12BO14950 172 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 NADKO95544 446 aaPredicted RBP15.25■□□□□ 0.03
CCDC40-201ENST00000269318 UBL4AP11441 157 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 LCN1P31025 176 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 GPR143P51810 404 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 TUBA1BP68363 451 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 CRYZQ08257 329 aaKnown RBP15.25■□□□□ 0.03
CCDC40-201ENST00000269318 NKAIN1Q4KMZ8 207 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 SHISA6Q6ZSJ9 500 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 TUBA1AQ71U36 451 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 CPOQ8IVL8 374 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 PRR22Q8IZ63 422 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 TMEM105Q8N8V8 129 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 GATSQ8NAP1 163 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 OR51A7Q8NH64 312 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 CEP76Q8TAP6 659 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 IFI44Q8TCB0 444 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 ADOQ96SZ5 270 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 CENPOQ9BU64 300 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 FN3KQ9H479 309 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 MCCC2Q9HCC0 563 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 COPS7AQ9UBW8 275 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 RARRES3Q9UL19 164 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 ICAM5Q9UMF0 924 aa15.25■□□□□ 0.03
CCDC40-201ENST00000269318 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 TMEM129A0AVI4 362 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 OR6C76A6NM76 312 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 AGRPO00253 132 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 TSPAN2O60636 221 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 SCRG1O75711 98 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 HPGDP15428 266 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 SOX3P41225 446 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 COPZ1P61923 177 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 FOXK2Q01167 660 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 MLLT11Q13015 90 aaPredicted RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 ZNF385CQ66K41 422 aaPredicted RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 DESI1Q6ICB0 168 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 CBLN3Q6UW01 205 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 USP43Q70EL4 1123 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 CXXC5Q7LFL8 322 aaKnown RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 OAFQ86UD1 273 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 DACH2Q96NX9 599 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 TNFRSF13CQ96RJ3 184 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 SH3GL3Q99963 347 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 CHCHD6Q9BRQ6 235 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 RNF167Q9H6Y7 350 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 SYNDIG1Q9H7V2 258 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 EXOGQ9Y2C4 368 aaKnown RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 LOC100506127A0A0U1RQW1 187 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 CDC14CA4D256 554 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 FAM183AA6NL82 134 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 SOCS6O14544 535 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 ICOSLGO75144 302 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 CER1O95813 267 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 ONECUT2O95948 504 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 LIMS3P0CW19 117 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 LIMS4P0CW20 117 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 MYL12AP19105 171 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 OPRL1P41146 370 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 NR0B1P51843 470 aaKnown RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 C1DQ13901 141 aaKnown RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 TRIM61Q5EBN2 209 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 ZNF362Q5T0B9 420 aaPredicted RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 SLC23A3Q6PIS1 610 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 SHFQ7M4L6 423 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 SLC43A2Q8N370 569 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 PHOSPHO1Q8TCT1 267 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 SH3YL1Q96HL8 342 aaPredicted RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 IFT27Q9BW83 186 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 RTN4RQ9BZR6 473 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 CMC2Q9NRP2 79 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 FBXO4Q9UKT5 387 aa15.24■□□□□ 0.03
CCDC40-201ENST00000269318 EXOSC1Q9Y3B2 195 aaKnown RBP15.24■□□□□ 0.03
CCDC40-201ENST00000269318 GNB5O14775 395 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 ZNF264O43296 627 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 REM1O75628 298 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 SERPINB10P48595 397 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 TIMM50Q3ZCQ8 353 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 SLC35F1Q5T1Q4 408 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 HLA-DQA1Q5Y7H0 255 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 FAAH2Q6GMR7 532 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 WBP2NLQ6ICG8 309 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 NIPAL3Q6P499 406 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 PLBD1Q6P4A8 553 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 SLC29A4Q7RTT9 530 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 CROCCP3Q8IVE0 287 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 GID4Q8IVV7 300 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 SLC15A4Q8N697 577 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 AMER2Q8N7J2 671 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 ZNF485Q8NCK3 441 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 C17orf47Q8NEP4 570 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 OR4F15Q8NGB8 312 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 BORCS5Q969J3 196 aa15.23■□□□□ 0.03
CCDC40-201ENST00000269318 CCNL2Q96S94 520 aaPredicted RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms