RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 KDELR2P33947 212 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 MSX2P35548 267 aaPredicted RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 EIF1P41567 113 aaKnown RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 KCNJ5P48544 419 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ZNF136P52737 540 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 CASP6P55212 293 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 KCNC4Q03721 635 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 MERTKQ12866 999 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ZSWIM7Q19AV6 140 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 LRRC23Q53EV4 343 aaPredicted RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 C4orf17Q53FE4 359 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 POMZP3Q6PJE2 187 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ENPP6Q6UWR7 440 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 PLXDC2Q6UX71 529 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 C16orf89Q6UX73 402 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 PLEKHM3Q6ZWE6 761 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ZNF550Q7Z398 422 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ATP6V1C2Q8NEY4 427 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 OR10Q1Q8NGQ4 319 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ST8SIA1Q92185 356 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 FIG4Q92562 907 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 MRGPRX4Q96LA9 322 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 TUBA1CQ9BQE3 449 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ARMC7Q9H6L4 198 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 CD300AQ9UGN4 299 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ERRFI1Q9UJM3 462 aaPredicted RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 FAM215AQ9Y5M1 114 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 UBR5O95071 2799 aaPredicted RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 HELZ2Q9BYK8 2649 aaKnown RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 MYO18BQ8IUG5 2567 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 LINC01387J3KSC0 135 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 M0R3H8 397 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 CXCR6O00574 342 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 GSTA4O15217 222 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 TPST2O60704 377 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 LGI1O95970 557 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 TCN1P20061 433 aaPredicted RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 ACVR2AP27037 513 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 ADH6P28332 368 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 DLX5P56178 289 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 CEACAM7Q14002 265 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 BCL2A1Q16548 175 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 CYBRD1Q53TN4 286 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 GGNQ86UU5 652 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 RBM45Q8IUH3 476 aaKnown RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 LACC1Q8IV20 430 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 CADM2Q8N3J6 435 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 MARVELD2Q8N4S9 558 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 OR4D11Q8NGI4 311 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 SLC26A7Q8TE54 656 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 TMEM234Q8WY98 164 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 TP63Q9H3D4 680 aaPredicted RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 CTPS2Q9NRF8 586 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 TAS2R1Q9NYW7 299 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 EGFL7Q9UHF1 273 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 MEMO1Q9Y316 297 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 AP4B1Q9Y6B7 739 aa11.5□□□□□ -0.57
SS18-202ENST00000269138 FASNP49327 2511 aaKnown RBP11.5□□□□□ -0.57
SS18-202ENST00000269138 A0A0J9YW62 118 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 A0A1B0GUH1 482 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 FIGNL2A6NMB9 653 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 AHRRA9YTQ3 701 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 H0Y3Z8 333 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 FAAHO00519 579 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 WDR1O75083 606 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 FESP07332 822 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 CCNA2P20248 432 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 TNFRSF1BP20333 461 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 HTR2AP28223 471 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 TACR3P29371 465 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 SFTPDP35247 375 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 RAC1P63000 192 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 NRF1Q16656 503 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 ACSF3Q4G176 576 aaPredicted RBP11.49□□□□□ -0.57
SS18-202ENST00000269138 SAMD4BQ5PRF9 694 aaKnown RBP11.49□□□□□ -0.57
SS18-202ENST00000269138 C1orf185Q5T7R7 199 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 C6orf89Q6UWU4 347 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 RPTNQ6XPR3 784 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 SEM1Q6ZVN7 128 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 GRINAQ7Z429 371 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 ADGRG3Q86Y34 549 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 PM20D2Q8IYS1 436 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 LILRA2Q8N149 483 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 BHLHE22Q8NFJ8 381 aaPredicted RBP11.49□□□□□ -0.57
SS18-202ENST00000269138 DMRTA2Q96SC8 542 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 ARHGDIGQ99819 225 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 NDE1Q9NXR1 346 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 OSGIN1Q9UJX0 560 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 SLC13A4Q9UKG4 626 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 SLC5A6Q9Y289 635 aa11.49□□□□□ -0.57
SS18-202ENST00000269138 HIVEP3Q5T1R4 2406 aa11.48□□□□□ -0.57
SS18-202ENST00000269138 E9PLN8 166 aa11.48□□□□□ -0.57
SS18-202ENST00000269138 SYT5O00445 386 aa11.48□□□□□ -0.57
SS18-202ENST00000269138 EIF1AYO14602 144 aaKnown RBP11.48□□□□□ -0.57
SS18-202ENST00000269138 RNF224P0DH78 156 aa11.48□□□□□ -0.57
SS18-202ENST00000269138 GLI4P10075 376 aa11.48□□□□□ -0.57
SS18-202ENST00000269138 HSD17B1P14061 328 aa11.48□□□□□ -0.57
SS18-202ENST00000269138 GGT1P19440 569 aa11.48□□□□□ -0.57
SS18-202ENST00000269138 ELK4P28324 431 aa11.48□□□□□ -0.57
SS18-202ENST00000269138 HTR1EP28566 365 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms