RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 EFNB1P98172 346 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 FOXK2Q01167 660 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 POU4F3Q15319 338 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 RPE65Q16518 533 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 SLC25A30Q5SVS4 291 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 HBMQ6B0K9 141 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 LRRC28Q86X40 367 aaPredicted RBP11.74□□□□□ -0.53
LIG1-201ENST00000263274 TCTE3Q8IZS6 198 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 LILRB2Q8N423 598 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 ARIH2OSQ8N7S6 290 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 OR5M3Q8NGP4 307 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 SMPDL3BQ92485 455 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 FGF13Q92913 245 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 MOAP1Q96BY2 351 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 HYLS1Q96M11 299 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 ERMAPQ96PL5 475 aaPredicted RBP11.74□□□□□ -0.53
LIG1-201ENST00000263274 TNFRSF13CQ96RJ3 184 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 TEAD3Q99594 435 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 MARVELD1Q9BSK0 173 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 FN3KQ9H479 309 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 TMEM27Q9HBJ8 222 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 GNG8Q9UK08 70 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 SLC27A6Q9Y2P4 619 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 A0A1B0GVT2 93 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 CARNS1A5YM72 827 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 LRRN3E7EW58 273 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 CACNB4O00305 520 aaPredicted RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 CDC123O75794 336 aaPredicted RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 RASGRP1O95267 797 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 RAB3BP20337 219 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 MAGEB1P43366 347 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 PRMT2P55345 433 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 CLDN12P56749 244 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 MLC1Q15049 377 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 NIPAL3Q6P499 406 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 METAP1DQ6UB28 335 aaPredicted RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 ASPGQ86U10 573 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 ZNF761Q86XN6 746 aaPredicted RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 ETFBKMTQ8IXQ9 262 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 DUSP18Q8NEJ0 188 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 OR4D9Q8NGE8 314 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 OR2L8Q8NGY9 312 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 SDF2Q99470 211 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 AIFM2Q9BRQ8 373 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 GPR174Q9BXC1 333 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 LRRN3Q9H3W5 708 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 RPP14O95059 124 aaKnown RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 RCBTB2O95199 551 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 ZGLP1P0C6A0 271 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 TAGLNQ01995 201 aaKnown RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 FGL2Q14314 439 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 HES5Q5TA89 166 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 SIAH3Q8IW03 269 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 OR5T3Q8NGG3 340 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 OR5J2Q8NH18 312 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 MS4A4EQ96PG1 132 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 ISYNA1Q9NPH2 558 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 ASB6Q9NWX5 421 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 TMEM5Q9Y2B1 443 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 GRXCR1A8MXD5 290 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 B3GALT2O43825 422 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 PRKAR1BP31321 381 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 CRYZQ08257 329 aaKnown RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 ODF4Q2M2E3 257 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 ESCO2Q56NI9 601 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 TANGO2Q6ICL3 276 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 WDR88Q6ZMY6 472 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 ZNF655Q8N720 491 aaPredicted RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 RAB7BQ96AH8 199 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 PDCD1LG2Q9BQ51 273 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 SLC25A18Q9H1K4 315 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 CLEC4MQ9H2X3 399 aaPredicted RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 NT5DC2Q9H857 520 aa11.73□□□□□ -0.53
LIG1-201ENST00000263274 MRPS18AQ9NVS2 196 aaKnown RBP11.73□□□□□ -0.53
LIG1-201ENST00000263274 ANKRD61A6NGH8 418 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 H0Y8X5 98 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 CXCL3P19876 107 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 EDNRAP25101 427 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 VSX2P58304 361 aaPredicted RBP11.72□□□□□ -0.53
LIG1-201ENST00000263274 SNTB2Q13425 540 aaKnown RBP11.72□□□□□ -0.53
LIG1-201ENST00000263274 CD200R1LQ6Q8B3 271 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 RNF44Q7L0R7 432 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 ACOT12Q8WYK0 555 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 PTP4A1Q93096 173 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 SLC17A9Q9BYT1 436 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 OR51J1Q9H342 316 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 NIPAL2Q9H841 368 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 FOLH1BQ9HBA9 442 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 FGF22Q9HCT0 170 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 TBC1D29Q9UFV1 150 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 COLEC10Q9Y6Z7 277 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 OBSL1O75147 1896 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 TP53BP1Q12888 1972 aaPredicted RBP11.72□□□□□ -0.53
LIG1-201ENST00000263274 OR10H2O60403 315 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 STX11O75558 287 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 EML2O95834 649 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 ERGP11308 486 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 ZNF3P17036 446 aa11.72□□□□□ -0.53
LIG1-201ENST00000263274 POU3F3P20264 500 aaPredicted RBP11.72□□□□□ -0.53
LIG1-201ENST00000263274 IL32P24001 234 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms