RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 POU3F2P20265 443 aaPredicted RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 NPR2P20594 1047 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 FGF9P31371 208 aaPredicted RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 AKR1D1P51857 326 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 PSMA6P60900 246 aaKnown RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 SNRPNP63162 240 aaKnown RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 CDK3Q00526 305 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 PRDX1Q06830 199 aaKnown RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 ZNF234Q14588 700 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 LGALSLQ3ZCW2 172 aaPredicted RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 C2orf27AQ580R0 203 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 RANBP3LQ86VV4 465 aaPredicted RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 HDDC3Q8N4P3 179 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 SRFBP1Q8NEF9 429 aaKnown RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 OR52E1Q8NGJ3 308 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 OR2T4Q8NH00 348 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 MOSPD2Q8NHP6 518 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 TMEM239Q8WW34 195 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 BPIFA2Q96DR5 249 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 CHFRQ96EP1 664 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 PEX11GQ96HA9 241 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 TEAD3Q99594 435 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 MCOLN1Q9GZU1 580 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 KRCC1Q9NPI7 259 aaPredicted RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 OTOL1A6NHN0 477 aaPredicted RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 BLOC1S5-TXNDC5H3BN57 136 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 GPR171O14626 319 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 APOC3P02656 99 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 GALEQ14376 348 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 PYHIN1Q6K0P9 492 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 UBE2Q1Q7Z7E8 422 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 TMED4Q7Z7H5 227 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 LRRC56Q8IYG6 542 aaPredicted RBP11.11□□□□□ -0.63
USHBP1-201ENST00000252597 CRIPAKQ8N1N5 446 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 SPERTQ8NA61 448 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 ZBTB44Q8NCP5 570 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 HSD17B8Q92506 261 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 HS6ST2Q96MM7 605 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 MAB21L2Q9Y586 359 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 AP1M2Q9Y6Q5 423 aa11.11□□□□□ -0.63
USHBP1-201ENST00000252597 HELZP42694 1942 aaKnown RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3DA0A087WVF3 549 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3IA0A087WXS9 549 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3EA0A087X179 549 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3KA0A087X1G2 549 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3FA6NER0 549 aaPredicted RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3LB9A6J9 549 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 SPDEFO95238 335 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3HP0C7X1 549 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 RAD52P43351 418 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 GDI2P50395 445 aaKnown RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 FOXK2Q01167 660 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 DEFA5Q01523 94 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TCTE1Q5JU00 501 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3GQ6DHY5 549 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3CQ6IPX1 549 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 METAP1DQ6UB28 335 aaPredicted RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 VITQ6UXI7 678 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 NHLRC1Q6VVB1 395 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 RTL4Q6ZR62 310 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 Q6ZTK2 550 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TBC1D3Q8IZP1 549 aaPredicted RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 DIO2Q92813 273 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 KIAA1143Q96AT1 154 aaPredicted RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TSSK2Q96PF2 358 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 ARL6Q9H0F7 186 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 DPEP2Q9H4A9 486 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 CYSLTR2Q9NS75 346 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 ACSS1Q9NUB1 689 aaPredicted RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 COPS3Q9UNS2 423 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 ZNF443Q9Y2A4 671 aaPredicted RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 MED31Q9Y3C7 131 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 SPAG17Q6Q759 2223 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TCRBV16S1A1N1A0A5B0 115 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 OR6C74A6NCV1 312 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 PKLRP30613 574 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 STAT5AP42229 794 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 GAS1P54826 345 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TNK1Q13470 666 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 OR1Q1Q15612 314 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 BEX5Q5H9J7 111 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 ZNF782Q6ZMW2 699 aaPredicted RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 ZNF836Q6ZNA1 936 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 CFAP77Q6ZQR2 320 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 KIAA0907Q7Z7F0 614 aaPredicted RBP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 BMPERQ8N8U9 685 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 OR5T3Q8NGG3 340 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 OR2A1Q8NGT9 310 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 OR52I2Q8NH67 350 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 TNFAIP8L1Q8WVP5 186 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 MS4A6EQ96DS6 147 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 HSPA12BQ96MM6 686 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 MED18Q9BUE0 208 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.1□□□□□ -0.63
USHBP1-201ENST00000252597 POT1Q9NUX5 634 aa11.1□□□□□ -0.63
USHBP1-201ENST00000252597 A0A087WV48 116 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 A0A1W2PPL8 197 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 KDM4EB2RXH2 506 aaPredicted RBP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 LILRB5O75023 590 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 THY1P04216 161 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms