RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 GCAP28676 217 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 CXCL12P48061 93 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 CX3CR1P49238 355 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 PCBD1P61457 104 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 CXADRP78310 365 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 DEFB103AP81534 67 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 ZNF91Q05481 1191 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 KRBOX4Q5JUW0 171 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 TAS1R1Q7RTX1 841 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 ZNF595Q8IYB9 648 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 MMP28Q9H239 520 aa12.7□□□□□ -0.38
SF3A1-201ENST00000215793 MYEF2Q9P2K5 600 aaKnown RBP12.7□□□□□ -0.38
SF3A1-201ENST00000215793 TIMM8BQ9Y5J9 83 aaPredicted RBP12.7□□□□□ -0.38
SF3A1-201ENST00000215793 SIGLEC1Q9BZZ2 1709 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 LOC105369274A0A096LPK9 316 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 CD38P28907 300 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 C21orf33P30042 268 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 YPEL5P62699 121 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 RELAQ04206 551 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 METAP1DQ6UB28 335 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 KIAA0907Q7Z7F0 614 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 OR4N4Q8N0Y3 316 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 STARD5Q9NSY2 213 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 TMEM269A0A1B0GVZ9 245 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 P2RX6O15547 441 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 GPR39O43194 453 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 IGHG1P01857 330 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 ETV6P41212 452 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 MRPS21P82921 87 aaKnown RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 GPR18Q14330 331 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 B3GNT8Q7Z7M8 397 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 COMTD1Q86VU5 262 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 VRK2Q86Y07 508 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 MKXQ8IYA7 352 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 ZFP90Q8TF47 636 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 RSC1A1Q92681 617 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 CPPED1Q9BRF8 314 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 SLC6A20Q9NP91 592 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 TRAV27A0A087WT01 109 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 SPDEFO95238 335 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 ZNF142P52746 1687 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 COL9A2Q14055 689 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 RBM39Q14498 530 aaKnown RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 NR0B2Q15466 257 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 CCNJQ5T5M9 372 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 LYSMD4Q5XG99 296 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 RPL22L1Q6P5R6 122 aaKnown RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 ZBED3Q96IU2 234 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 MAP3K3Q99759 626 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 PAPOLGQ9BWT3 736 aaKnown RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 EMC3Q9P0I2 261 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 DNAJB11Q9UBS4 358 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 MYO10Q9HD67 2058 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 OTOL1A6NHN0 477 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 HHLA1C9JL84 531 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 C1SP09871 688 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 PKLRP30613 574 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 NR4A2P43354 598 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 LBX1P52954 281 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 IL13RA1P78552 427 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 FGL2Q14314 439 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 RPE65Q16518 533 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 PAQR9Q6ZVX9 377 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 STEAP2Q8NFT2 490 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 GGHQ92820 318 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 KCTD12Q96CX2 325 aaKnown RBP12.69□□□□□ -0.38
SF3A1-201ENST00000215793 CNTNAP3BQ96NU0 1288 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 CEPT1Q9Y6K0 416 aa12.69□□□□□ -0.38
SF3A1-201ENST00000215793 A0A1B0GV50 99 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 CDHR4A6H8M9 788 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 C1orf196B1AJZ1 125 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 ALPLP05186 524 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 TAS2R19P59542 299 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 EEF1A1P68104 462 aaKnown RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 MFSD9Q8NBP5 474 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 CLEC1AQ8NC01 280 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 OR5L1Q8NGL2 311 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 UTP4Q969X6 686 aaKnown RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 ZNF486Q96H40 463 aaPredicted RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 ENKD1Q9H0I2 346 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 CUTCQ9NTM9 273 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 B3GNT2Q9NY97 397 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 FAM230AA0A1W2PPH8 454 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 FAM183AA6NL82 134 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 GYPBP06028 91 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 PTPN6P29350 595 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 RPP30P78346 268 aaKnown RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 KCTD11Q693B1 232 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 CLEC14AQ86T13 490 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 PPP1R3BQ86XI6 285 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 SERPINA12Q8IW75 414 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 KHSRPQ92945 711 aaKnown RBP eCLIP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 ASF1BQ9NVP2 202 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 NENFQ9UMX5 172 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 CD300LBA8K4G0 201 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 MPPED1O15442 326 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 NUDT21O43809 227 aaKnown RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 TPT1P13693 172 aaKnown RBP12.68□□□□□ -0.38
SF3A1-201ENST00000215793 PVRP15151 417 aa12.68□□□□□ -0.38
SF3A1-201ENST00000215793 POU3F2P20265 443 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms