RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ANP32EQ9BTT0 268 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 FTHL17Q9BXU8 183 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 XPO4Q9C0E2 1151 aaKnown RBP2.01□□□□□ -2.09
CD44-239ENST00000639002 ING2Q9H160 280 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 GDAP2Q9NXN4 497 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 EPS15L1Q9UBC2 864 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 MTRF1LQ9UGC7 380 aaKnown RBP2.01□□□□□ -2.09
CD44-239ENST00000639002 ANGPTL2Q9UKU9 493 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 EIF3LQ9Y262 564 aaKnown RBP2.01□□□□□ -2.09
CD44-239ENST00000639002 A0A0G2JRQ6 117 aa2□□□□□ -2.09
CD44-239ENST00000639002 ARHGAP42A6NI28 874 aa2□□□□□ -2.09
CD44-239ENST00000639002 H3BTX0 84 aa2□□□□□ -2.09
CD44-239ENST00000639002 OR10H3O60404 316 aa2□□□□□ -2.09
CD44-239ENST00000639002 B3GALNT1O75752 331 aa2□□□□□ -2.09
CD44-239ENST00000639002 NDUFA7O95182 113 aa2□□□□□ -2.09
CD44-239ENST00000639002 MOSP00540 346 aa2□□□□□ -2.09
CD44-239ENST00000639002 IGLV3-19P01714 112 aa2□□□□□ -2.09
CD44-239ENST00000639002 COX7A1P24310 79 aa2□□□□□ -2.09
CD44-239ENST00000639002 GNPDA1P46926 289 aa2□□□□□ -2.09
CD44-239ENST00000639002 CRISP3P54108 245 aa2□□□□□ -2.09
CD44-239ENST00000639002 SRP54P61011 504 aaKnown RBP2□□□□□ -2.09
CD44-239ENST00000639002 HMGN5P82970 282 aaKnown RBP2□□□□□ -2.09
CD44-239ENST00000639002 SLC10A5Q5PT55 438 aa2□□□□□ -2.09
CD44-239ENST00000639002 IL23RQ5VWK5 629 aa2□□□□□ -2.09
CD44-239ENST00000639002 Q5W150 140 aa2□□□□□ -2.09
CD44-239ENST00000639002 OR8G2PQ6IF36 304 aa2□□□□□ -2.09
CD44-239ENST00000639002 RFLNAQ6ZTI6 216 aa2□□□□□ -2.09
CD44-239ENST00000639002 CATSPER4Q7RTX7 472 aa2□□□□□ -2.09
CD44-239ENST00000639002 ANKRD20A12PQ8NF67 263 aa2□□□□□ -2.09
CD44-239ENST00000639002 IL1F10Q8WWZ1 152 aa2□□□□□ -2.09
CD44-239ENST00000639002 PIGCQ92535 297 aa2□□□□□ -2.09
CD44-239ENST00000639002 RASL11BQ9BPW5 248 aa2□□□□□ -2.09
CD44-239ENST00000639002 POLR2J2Q9GZM3 115 aaKnown RBP2□□□□□ -2.09
CD44-239ENST00000639002 POLR2J3Q9H1A7 115 aaKnown RBP2□□□□□ -2.09
CD44-239ENST00000639002 POLR3FQ9H1D9 316 aaPredicted RBP2□□□□□ -2.09
CD44-239ENST00000639002 SLC25A51Q9H1U9 297 aa2□□□□□ -2.09
CD44-239ENST00000639002 TPK1Q9H3S4 243 aa2□□□□□ -2.09
CD44-239ENST00000639002 BCAP29Q9UHQ4 241 aa2□□□□□ -2.09
CD44-239ENST00000639002 ZNF490Q9ULM2 529 aaPredicted RBP2□□□□□ -2.09
CD44-239ENST00000639002 ERVW-1Q9UQF0 538 aa2□□□□□ -2.09
CD44-239ENST00000639002 IKBKGQ9Y6K9 419 aa2□□□□□ -2.09
CD44-239ENST00000639002 GPR179Q6PRD1 2367 aa2□□□□□ -2.09
CD44-239ENST00000639002 SPAG9O60271 1321 aaKnown RBP1.99□□□□□ -2.09
CD44-239ENST00000639002 MAP3K15Q6ZN16 1313 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 C11orf94C9JXX5 98 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 SSX5O60225 188 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 PCCBP05166 539 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 ALPPL2P10696 532 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 MTTPP55157 894 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 KRTAP12-4P60329 112 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 MYBPC1Q00872 1141 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 CNSTQ6PJW8 725 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 TAF8Q7Z7C8 310 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 VRK2Q86Y07 508 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 CNTN4Q8IWV2 1026 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 EXOC6Q8TAG9 804 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 UCN3Q969E3 161 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 ELMO2Q96JJ3 720 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 NSMCE2Q96MF7 247 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 CYP2S1Q96SQ9 504 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 CITED1Q99966 193 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 PELOQ9BRX2 385 aaKnown RBP1.99□□□□□ -2.09
CD44-239ENST00000639002 TRPV5Q9NQA5 729 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 PRMT8Q9NR22 394 aaPredicted RBP1.99□□□□□ -2.09
CD44-239ENST00000639002 CYP39A1Q9NYL5 469 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.99□□□□□ -2.09
CD44-239ENST00000639002 KCNN3Q9UGI6 736 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 BTNL2Q9UIR0 455 aa1.99□□□□□ -2.09
CD44-239ENST00000639002 HOOK1Q9UJC3 728 aaKnown RBP1.99□□□□□ -2.09
CD44-239ENST00000639002 TTC21BQ7Z4L5 1316 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 ABCC9O60706 1549 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 HSFX4A0A1B0GTS1 333 aaPredicted RBP1.98□□□□□ -2.09
CD44-239ENST00000639002 A0A1B0GWB2 263 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 HSFX3A0A1B0GWH4 333 aaPredicted RBP1.98□□□□□ -2.09
CD44-239ENST00000639002 CFAP73A6NFT4 308 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 TRIM64CA6NLI5 447 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 NDC80O14777 642 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 VEGFDO43915 354 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 OLFM2O95897 454 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 MT-ND3P03897 115 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 ABHD2P08910 425 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 TFPI2P48307 235 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 BPIFB3P59826 476 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 FUT7Q11130 342 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 SF3A2Q15428 464 aaKnown RBP1.98□□□□□ -2.09
CD44-239ENST00000639002 FAM83EQ2M2I3 478 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 RABGAP1LQ5R372 815 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 NEK5Q6P3R8 708 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 TMEM184AQ6ZMB5 413 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 VPS36Q86VN1 386 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 ZNF615Q8N8J6 731 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 ZSCAN4Q8NAM6 433 aaPredicted RBP1.98□□□□□ -2.09
CD44-239ENST00000639002 URGCPQ8TCY9 931 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 FCGR1BQ92637 280 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 N4BP2L2Q92802 583 aaPredicted RBP1.98□□□□□ -2.09
CD44-239ENST00000639002 ATP6V0BQ99437 205 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 NRIP2Q9BQI9 281 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 ATG10Q9H0Y0 220 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 AIG1Q9NVV5 245 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 ANO10Q9NW15 660 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms