RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PTNP21246 168 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 ADH6P28332 368 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 CCR4P51679 360 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 FAPQ12884 760 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 QPRTQ15274 297 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 XKR7Q5GH72 579 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 C6orf136Q5SQH8 315 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 ADAM5Q6NVV9 412 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 BHLHA15Q7RTS1 189 aaPredicted RBP14.33□□□□□ -0.12
CLN3-246ENST00000636228 LSRQ86X29 649 aaPredicted RBP14.33□□□□□ -0.12
CLN3-246ENST00000636228 FNDC5Q8NAU1 212 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 KBTBD8Q8NFY9 601 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 OR56A1Q8NGH5 318 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 SMAP2Q8WU79 429 aaPredicted RBP14.33□□□□□ -0.12
CLN3-246ENST00000636228 HSD17B8Q92506 261 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 KISS1RQ969F8 398 aaPredicted RBP14.33□□□□□ -0.12
CLN3-246ENST00000636228 FBXW5Q969U6 566 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 GTPBP3Q969Y2 492 aaKnown RBP14.33□□□□□ -0.12
CLN3-246ENST00000636228 APOPT1Q96IL0 206 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 OR7D2Q96RA2 312 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 ZDHHC2Q9UIJ5 367 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 LIPT1Q9Y234 373 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 DTNAQ9Y4J8 743 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 ACTL7BQ9Y614 415 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 ZANQ9Y493 2812 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 GJE1A6NN92 205 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 ESPNB1AK53 854 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 NPIPB9F8W1W9 429 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 OVOL3O00110 214 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 RAMP1O60894 148 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 H6PDO95479 791 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 MAPK1P28482 360 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 SLC7A1P30825 629 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 ACVR1BP36896 505 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 CASP9P55211 416 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 BSPH1Q075Z2 132 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 ITGADQ13349 1161 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 GPR68Q15743 365 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 STK11Q15831 433 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 ZNF672Q499Z4 452 aaPredicted RBP14.32□□□□□ -0.12
CLN3-246ENST00000636228 ATP6AP1LQ52LC2 224 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 PDZK1Q5T2W1 519 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 SEZ6L2Q6UXD5 910 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 OR5W2Q8NH69 310 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 PSMA8Q8TAA3 256 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 COQ8BQ96D53 544 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 OR5B2Q96R09 309 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 ZNF300Q96RE9 604 aaPredicted RBP14.32□□□□□ -0.12
CLN3-246ENST00000636228 PSD2Q9BQI7 771 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 SERHL2Q9H4I8 314 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 ESRP2Q9H6T0 727 aaKnown RBP14.32□□□□□ -0.12
CLN3-246ENST00000636228 PPCSQ9HAB8 311 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 EML4Q9HC35 981 aaKnown RBP14.32□□□□□ -0.12
CLN3-246ENST00000636228 KCNE5Q9UJ90 142 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 ROS1P08922 2347 aa14.32□□□□□ -0.12
CLN3-246ENST00000636228 USF3Q68DE3 2245 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 CENPVL1A0A0U1RR11 272 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 SMAD9O15198 467 aaKnown RBP14.31□□□□□ -0.12
CLN3-246ENST00000636228 ZNF264O43296 627 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 FCMRO60667 390 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 TMCC2O75069 709 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 UBL4AP11441 157 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 DDX5P17844 614 aaKnown RBP14.31□□□□□ -0.12
CLN3-246ENST00000636228 SOAT1P35610 550 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 RPL3P39023 403 aaKnown RBP14.31□□□□□ -0.12
CLN3-246ENST00000636228 SUMO3P55854 103 aaPredicted RBP14.31□□□□□ -0.12
CLN3-246ENST00000636228 HBA1P69905 142 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 RASGEF1BQ0VAM2 473 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 PGGHGQ32M88 737 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 PGS1Q32NB8 556 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 LSM12Q3MHD2 195 aaKnown RBP14.31□□□□□ -0.12
CLN3-246ENST00000636228 TIGD2Q4W5G0 525 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 TOR1AIP2Q8NFQ8 470 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 PIWIL2Q8TC59 973 aaKnown RBP14.31□□□□□ -0.12
CLN3-246ENST00000636228 TCP10LQ8TDR4 215 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 DNAJA3Q96EY1 480 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 TRMT61AQ96FX7 289 aaKnown RBP14.31□□□□□ -0.12
CLN3-246ENST00000636228 MRGPRX4Q96LA9 322 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 SDF2Q99470 211 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 THUMPD3Q9BV44 507 aaKnown RBP14.31□□□□□ -0.12
CLN3-246ENST00000636228 DUSP26Q9BV47 211 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 REG4Q9BYZ8 158 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 NGBQ9NPG2 151 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 ATAD3AQ9NVI7 634 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 GDF2Q9UK05 429 aaPredicted RBP14.31□□□□□ -0.12
CLN3-246ENST00000636228 CSPG4Q6UVK1 2322 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 HEATR5AQ86XA9 2040 aa14.31□□□□□ -0.12
CLN3-246ENST00000636228 A0A1W2PP18 115 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 SERINC4A6NH21 518 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 EIF4E2O60573 245 aaKnown RBP14.3□□□□□ -0.12
CLN3-246ENST00000636228 CRLF1O75462 422 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 LYPLA1O75608 230 aaPredicted RBP14.3□□□□□ -0.12
CLN3-246ENST00000636228 CD8AP01732 235 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 KRT16P08779 473 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 G6PDP11413 515 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 CREB1P16220 341 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 MATN1P21941 496 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 IDUAP35475 653 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 OR3A2P47893 321 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 C21orf58P58505 322 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms