RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TRIM33Q9UPN9 1127 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 A0A1W2PP18 115 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 SLC22A20A6NK97 555 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 GTPBP1O00178 669 aaKnown RBP14.5□□□□□ -0.09
TRIM28-213ENST00000598355 CLIC1O00299 241 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 SEC14L5O43304 696 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 ADAM11O75078 769 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 TNFSF13O75888 250 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 TFPTP0C1Z6 253 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 IL11P20809 199 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 BMP5P22003 454 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 OPRM1P35372 400 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 DSTNP60981 165 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 KCNJ10P78508 379 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 QPRTQ15274 297 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 RGNQ15493 299 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 AGKQ53H12 422 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 HSP90B2PQ58FF3 399 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 ESPNLQ6ZVH7 1005 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 TSPEARQ8WU66 669 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 ST8SIA1Q92185 356 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 FIG4Q92562 907 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 C14orf79Q96F83 325 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 ZNF845Q96IR2 970 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-213ENST00000598355 PINK1Q9BXM7 581 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 PAQR5Q9NXK6 330 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-213ENST00000598355 VAPAQ9P0L0 249 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 SLAMF8Q9P0V8 285 aa14.5□□□□□ -0.09
TRIM28-213ENST00000598355 A0A0G2JND7 137 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 A0A0J9YW62 118 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 CLDN24A6NM45 220 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 UBTFL6P0CB48 400 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-213ENST00000598355 SHC1P29353 583 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 RPS3AP61247 264 aaKnown RBP14.49□□□□□ -0.09
TRIM28-213ENST00000598355 GUCY1A3Q02108 690 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 SELENBP1Q13228 472 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 PON3Q15166 354 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 PRAMEF8Q5VWM4 474 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 PRAMEF7Q5VXH5 474 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 OR2A2Q6IF42 318 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 DLEU7Q6UYE1 221 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 MEX3BQ6ZN04 569 aaKnown RBP14.49□□□□□ -0.09
TRIM28-213ENST00000598355 MCEMP1Q8IX19 187 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 DPP10Q8N608 796 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 OR10D3Q8NH80 312 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 FBXO27Q8NI29 283 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 FNDC9Q8TBE3 224 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 SLC38A5Q8WUX1 472 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 SMPDL3BQ92485 455 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 KLHL15Q96M94 604 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 TMEM120AQ9BXJ8 343 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 RAD21L1Q9H4I0 556 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 COQ10BQ9H8M1 238 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 MTHFD2LQ9H903 347 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-213ENST00000598355 A4GALTQ9NPC4 353 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-213ENST00000598355 DNAJB12Q9NXW2 375 aaKnown RBP14.49□□□□□ -0.09
TRIM28-213ENST00000598355 CALML5Q9NZT1 146 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 FOXD3Q9UJU5 478 aaPredicted RBP14.49□□□□□ -0.09
TRIM28-213ENST00000598355 FREM1Q5H8C1 2179 aa14.49□□□□□ -0.09
TRIM28-213ENST00000598355 A0A1W2PNV4 684 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 SYT5O00445 386 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 FAAHO00519 579 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 EIF1AYO14602 144 aaKnown RBP14.48□□□□□ -0.09
TRIM28-213ENST00000598355 NUDT14O95848 222 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 BCHEP06276 602 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 TROVE2P10155 538 aaKnown RBP eCLIP14.48□□□□□ -0.09
TRIM28-213ENST00000598355 NR2F1P10589 423 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 FCGR2AP12318 317 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 PPIBP23284 216 aaKnown RBP14.48□□□□□ -0.09
TRIM28-213ENST00000598355 ME2P23368 584 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 CRATP43155 626 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 CRISP3P54108 245 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 EEF1A1P68104 462 aaKnown RBP14.48□□□□□ -0.09
TRIM28-213ENST00000598355 EEF1A1P5Q5VTE0 462 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 GDF7Q7Z4P5 450 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 GCNT2Q8N0V5 402 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 C10orf111Q8N326 155 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 TMCO5AQ8N6Q1 288 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 OR2V1Q8NHB1 315 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 WDR60Q8WVS4 1066 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 RNASE6Q93091 150 aaKnown RBP14.48□□□□□ -0.09
TRIM28-213ENST00000598355 INTS12Q96CB8 462 aaKnown RBP14.48□□□□□ -0.09
TRIM28-213ENST00000598355 TMEM19Q96HH6 336 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 ZNF317Q96PQ6 595 aaPredicted RBP14.48□□□□□ -0.09
TRIM28-213ENST00000598355 THUMPD3Q9BV44 507 aaKnown RBP14.48□□□□□ -0.09
TRIM28-213ENST00000598355 IKZF5Q9H5V7 419 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 BCL2L10Q9HD36 194 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 TACC2O95359 2948 aa14.48□□□□□ -0.09
TRIM28-213ENST00000598355 CSMD2Q7Z408 3487 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 AQP8O94778 261 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 DBIP07108 87 aaKnown RBP14.47□□□□□ -0.09
TRIM28-213ENST00000598355 THBS1P07996 1170 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 NUDT7P0C024 238 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 ARAFP10398 606 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 GPX2P18283 190 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 NCF2P19878 526 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-213ENST00000598355 PGCP20142 388 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 MDH1P40925 334 aaKnown RBP14.47□□□□□ -0.09
TRIM28-213ENST00000598355 PCYT1AP49585 367 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms