RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PRPS1L1P21108 318 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 SLC1A6P48664 564 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 CLDN8P56748 225 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 WDR4P57081 412 aaKnown RBP11.13□□□□□ -0.63
TRIM28-212ENST00000597995 LASP1Q14847 261 aaKnown RBP11.13□□□□□ -0.63
TRIM28-212ENST00000597995 ZCCHC12Q6PEW1 402 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 PODNL1Q6PEZ8 512 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 TFAP2EQ6VUC0 442 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 HIPK1Q86Z02 1210 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 LILRA2Q8N149 483 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 GATSQ8NAP1 163 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 B4GALNT2Q8NHY0 566 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 POC1BQ8TC44 478 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 RNF128Q8TEB7 428 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 OR5P2Q8WZ92 322 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 GTPBP3Q969Y2 492 aaKnown RBP11.13□□□□□ -0.63
TRIM28-212ENST00000597995 GRIP2Q9C0E4 1043 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 KCNK9Q9NPC2 374 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 PNPOQ9NVS9 261 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 GPATCH2Q9NW75 528 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 ASIC5Q9NY37 505 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-212ENST00000597995 RAP2CQ9Y3L5 183 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 MXRA5Q9NR99 2828 aa11.13□□□□□ -0.63
TRIM28-212ENST00000597995 CADP27708 2225 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 FREM1Q5H8C1 2179 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 GJE1A6NN92 205 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 SCDO00767 359 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 ANKRD28O15084 1053 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 CLOCKO15516 846 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 CD5LO43866 347 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 ALOX5P09917 674 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 LINGO3P0C6S8 592 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 IL32P24001 234 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 ELK4P28324 431 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 RPL3P39023 403 aaKnown RBP11.12□□□□□ -0.63
TRIM28-212ENST00000597995 CCT3P49368 545 aaKnown RBP11.12□□□□□ -0.63
TRIM28-212ENST00000597995 HBA1P69905 142 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 PHC1P78364 1004 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 BST1Q10588 318 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 ITGADQ13349 1161 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 P2RY6Q15077 328 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 TAB1Q15750 504 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 CD226Q15762 336 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 ZNF239Q16600 458 aaKnown RBP11.12□□□□□ -0.63
TRIM28-212ENST00000597995 ZNF672Q499Z4 452 aaPredicted RBP11.12□□□□□ -0.63
TRIM28-212ENST00000597995 ALKBH2Q6NS38 261 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 HMBOX1Q6NT76 420 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 CDC73Q6P1J9 531 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 DNM1P46Q6ZS02 220 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 MTERF4Q7Z6M4 381 aaKnown RBP11.12□□□□□ -0.63
TRIM28-212ENST00000597995 MAPK1IP1LQ8NDC0 245 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 PIWIL2Q8TC59 973 aaKnown RBP11.12□□□□□ -0.63
TRIM28-212ENST00000597995 ABHD3Q8WU67 409 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 ROBO4Q8WZ75 1007 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 CDS1Q92903 461 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 BHLHE41Q9C0J9 482 aaPredicted RBP11.12□□□□□ -0.63
TRIM28-212ENST00000597995 SLCO5A1Q9H2Y9 848 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 PIGUQ9H490 435 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 SERHL2Q9H4I8 314 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 TMEM185BQ9H7F4 350 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 DUSP22Q9NRW4 184 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 KLHL13Q9P2N7 655 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 LIPT1Q9Y234 373 aa11.12□□□□□ -0.63
TRIM28-212ENST00000597995 CR1P17927 2039 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 NPIPA5A0A0B4J1W7 369 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 A0A1W2PP18 115 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 NPIPA7E9PJI5 369 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 SCN2BO60939 215 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 PRKD3O94806 890 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 YES1P07947 543 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 MYZAPP0CAP1 466 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 NPIPA8P0DM63 369 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 ACVR1BP36896 505 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 PRIM2P49643 509 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 RPL14P50914 215 aaKnown RBP11.11□□□□□ -0.63
TRIM28-212ENST00000597995 POU6F2P78424 691 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-212ENST00000597995 STX3Q13277 289 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 SMU1Q2TAY7 513 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 PGGHGQ32M88 737 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 BEND6Q5SZJ8 279 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-212ENST00000597995 OR4F3Q6IEY1 312 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 SSX8Q7RTT4 187 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 NUFIP2Q7Z417 695 aaKnown RBP11.11□□□□□ -0.63
TRIM28-212ENST00000597995 TUSC5Q8IXB3 177 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 CLECL1Q8IZS7 167 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 CLEC4FQ8N1N0 589 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 SLC43A2Q8N370 569 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 COX18Q8N8Q8 333 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 OR5AK3PQ8NH89 298 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 JADE3Q92613 823 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 KISS1RQ969F8 398 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-212ENST00000597995 ZNF524Q96C55 264 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 SH3YL1Q96HL8 342 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-212ENST00000597995 STACQ99469 402 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 DUSP26Q9BV47 211 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 BTBD2Q9BX70 525 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 POTEKPQ9BYX7 375 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 NUF2Q9BZD4 464 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 BARX1Q9HBU1 254 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms