RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 MID2Q9UJV3 735 aa12.4□□□□□ -0.42
VMP1-209ENST00000588915 DTNAQ9Y4J8 743 aa12.4□□□□□ -0.42
VMP1-209ENST00000588915 RNF212BA8MTL3 300 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 A8MV72 311 aaPredicted RBP12.39□□□□□ -0.43
VMP1-209ENST00000588915 TMEM114B3SHH9 223 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 NPIPB9F8W1W9 429 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 GTPBP1O00178 669 aaKnown RBP12.39□□□□□ -0.43
VMP1-209ENST00000588915 LSM1O15116 133 aaKnown RBP12.39□□□□□ -0.43
VMP1-209ENST00000588915 EIF4E2O60573 245 aaKnown RBP12.39□□□□□ -0.43
VMP1-209ENST00000588915 CYTIPO60759 359 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 CD8AP01732 235 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 BCKDHAP12694 445 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 ENPP1P22413 925 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 MAPK1P28482 360 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 SLC7A1P30825 629 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 RPL38P63173 70 aaKnown RBP12.39□□□□□ -0.43
VMP1-209ENST00000588915 RASGEF1BQ0VAM2 473 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 ARL13AQ5H913 290 aaPredicted RBP12.39□□□□□ -0.43
VMP1-209ENST00000588915 KBTBD8Q8NFY9 601 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 OR5W2Q8NH69 310 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 TMEM158Q8WZ71 300 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 OR5P2Q8WZ92 322 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 NEUROG1Q92886 237 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 CDS1Q92903 461 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 MOAP1Q96BY2 351 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 CHMP6Q96FZ7 201 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 C16orf45Q96MC5 204 aaPredicted RBP12.39□□□□□ -0.43
VMP1-209ENST00000588915 RHNO1Q9BSD3 238 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 TUBB1Q9H4B7 451 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 YAE1D1Q9NRH1 226 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 ING1Q9UK53 422 aaPredicted RBP12.39□□□□□ -0.43
VMP1-209ENST00000588915 MGAT4BQ9UQ53 548 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 CARD8Q9Y2G2 431 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 DNAJC15Q9Y5T4 150 aa12.39□□□□□ -0.43
VMP1-209ENST00000588915 CR1P17927 2039 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 SHISA9B4DS77 424 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 ZNF264O43296 627 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 DNAJA2O60884 412 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 ADAM11O75078 769 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 LYPLA1O75608 230 aaPredicted RBP12.38□□□□□ -0.43
VMP1-209ENST00000588915 GGT1P19440 569 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 COX5AP20674 150 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 HPCAL1P37235 193 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 CCT3P49368 545 aaKnown RBP12.38□□□□□ -0.43
VMP1-209ENST00000588915 FAPQ12884 760 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 PDK3Q15120 406 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 TOMM34Q15785 309 aaPredicted RBP12.38□□□□□ -0.43
VMP1-209ENST00000588915 LSM12Q3MHD2 195 aaKnown RBP12.38□□□□□ -0.43
VMP1-209ENST00000588915 CHRFAM7AQ494W8 412 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 DCST2Q5T1A1 773 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 KANK2Q63ZY3 851 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 ZNF619Q8N2I2 560 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 CCDC63Q8NA47 563 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 OR10H5Q8NGA6 315 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 CLHC1Q8NHS4 586 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 CXorf36Q9H7Y0 433 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 ATAD3AQ9NVI7 634 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 FAF1Q9UNN5 650 aaPredicted RBP12.38□□□□□ -0.43
VMP1-209ENST00000588915 PTGDR2Q9Y5Y4 395 aa12.38□□□□□ -0.43
VMP1-209ENST00000588915 COPEO14579 308 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 SCAMP2O15127 329 aaKnown RBP12.37□□□□□ -0.43
VMP1-209ENST00000588915 OIP5O43482 229 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 TRIM13O60858 407 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 LYZL6O75951 148 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 LINC00032P0C843 101 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 CBFBQ13951 182 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 GALNTL6Q49A17 601 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.37□□□□□ -0.43
VMP1-209ENST00000588915 C3orf33Q6P1S2 294 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 BHLHB9Q6PI77 547 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 TMEM108Q6UXF1 575 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.37□□□□□ -0.43
VMP1-209ENST00000588915 GALNT5Q7Z7M9 940 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 SFXN5Q8TD22 340 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 ST8SIA1Q92185 356 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 OTUB1Q96FW1 271 aaPredicted RBP12.37□□□□□ -0.43
VMP1-209ENST00000588915 PPP3R2Q96LZ3 170 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 ADAD1Q96M93 576 aaKnown RBP12.37□□□□□ -0.43
VMP1-209ENST00000588915 PRPF18Q99633 342 aaKnown RBP12.37□□□□□ -0.43
VMP1-209ENST00000588915 GATA5Q9BWX5 397 aaPredicted RBP12.37□□□□□ -0.43
VMP1-209ENST00000588915 NMUR2Q9GZQ4 415 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 SERINC1Q9NRX5 453 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 GPATCH2Q9NW75 528 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 TMEM160Q9NX00 188 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 PRSS50Q9UI38 385 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 B3GALT5Q9Y2C3 310 aa12.37□□□□□ -0.43
VMP1-209ENST00000588915 OR5H1A6NKK0 313 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 ELOA3DA6NLF2 546 aaPredicted RBP12.36□□□□□ -0.43
VMP1-209ENST00000588915 DUXAA6NLW8 204 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 ESPNB1AK53 854 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 SMAD9O15198 467 aaKnown RBP12.36□□□□□ -0.43
VMP1-209ENST00000588915 RAMP1O60894 148 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 NDUFS7O75251 213 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 AK1P00568 194 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 FAM153BP0C7A2 387 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 FAM157CP0CG43 387 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 LAMP1P11279 417 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 UBL4AP11441 157 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 IGHV1-2P23083 117 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 FKBP2P26885 142 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms