RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PFN4Q8NHR9 129 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 SAMD8Q96LT4 415 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 GAL3ST4Q96RP7 486 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 SLC19A3Q9BZV2 496 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 WWTR1Q9GZV5 400 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 OR52D1Q9H346 318 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 UBQLN3Q9H347 655 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 FN3KQ9H479 309 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 HHATLQ9HCP6 504 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 SLC22A11Q9NSA0 550 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 A0A1W2PQD3 144 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 M0R082 166 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 IGF2P01344 180 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 HEXBP07686 556 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 SAGP10523 405 aaPredicted RBP13.04□□□□□ -0.32
LIG3-205ENST00000585941 PNMTP11086 282 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 FGF5P12034 268 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 ZNF182P17025 639 aaPredicted RBP13.04□□□□□ -0.32
LIG3-205ENST00000585941 SLC6A8P48029 635 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 C1DQ13901 141 aaKnown RBP13.04□□□□□ -0.32
LIG3-205ENST00000585941 TIMM50Q3ZCQ8 353 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 C3orf38Q5JPI3 329 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 PHF19Q5T6S3 580 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 SLC30A6Q6NXT4 461 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 KIRREL2Q6UWL6 708 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 LINC00299Q6ZSB3 139 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 SLC46A3Q7Z3Q1 461 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 PRSS58Q8IYP2 241 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 SLC34A3Q8N130 599 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 CADM2Q8N3J6 435 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 LNX2Q8N448 690 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 PROKR2Q8NFJ6 384 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 METTL21AQ8WXB1 218 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 TP53INP1Q96A56 240 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 FGF20Q9NP95 211 aaPredicted RBP13.04□□□□□ -0.32
LIG3-205ENST00000585941 MEPEQ9NQ76 525 aaPredicted RBP13.04□□□□□ -0.32
LIG3-205ENST00000585941 CHCHD3Q9NX63 227 aaKnown RBP13.04□□□□□ -0.32
LIG3-205ENST00000585941 NCOR1O75376 2440 aa13.04□□□□□ -0.32
LIG3-205ENST00000585941 A0A087WUJ7 227 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 FAM86C2PA6NEL3 165 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 D6RAR5 112 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 GTPBP1O00178 669 aaKnown RBP13.03□□□□□ -0.32
LIG3-205ENST00000585941 NTN3O00634 580 aaPredicted RBP13.03□□□□□ -0.32
LIG3-205ENST00000585941 ZNF264O43296 627 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 ADAM11O75078 769 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 REM1O75628 298 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 MYL12AP19105 171 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 LIPAP38571 399 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 MTNR1AP48039 350 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 EFNA3P52797 238 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 PNLIPRP2P54317 469 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 ARMCX4Q5H9R4 360 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 NXNL2Q5VZ03 156 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 WBP2NLQ6ICG8 309 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 GID4Q8IVV7 300 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 C9orf40Q8IXQ3 194 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 LOXL4Q96JB6 756 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 NECAB3Q96P71 396 aaPredicted RBP13.03□□□□□ -0.32
LIG3-205ENST00000585941 MGLLQ99685 303 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 GTPBP2Q9BX10 602 aaKnown RBP13.03□□□□□ -0.32
LIG3-205ENST00000585941 SLC26A1Q9H2B4 701 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 SLC24A3Q9HC58 644 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 C20orf141Q9NUB4 165 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 H2AFY2Q9P0M6 372 aaPredicted RBP13.03□□□□□ -0.32
LIG3-205ENST00000585941 ICAM5Q9UMF0 924 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 SIGLEC7Q9Y286 467 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 PCDHGB2Q9Y5G2 931 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 HEATR5AQ86XA9 2040 aa13.03□□□□□ -0.32
LIG3-205ENST00000585941 VSTM2BA6NLU5 285 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 IDSB3KWA1 339 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 KPNA4O00629 521 aaPredicted RBP13.02□□□□□ -0.32
LIG3-205ENST00000585941 AIREO43918 545 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 TSPAN2O60636 221 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 GP1BAP07359 652 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 GRK6P43250 576 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 SERPINB10P48595 397 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 SLC9A3P48764 834 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 RGS6P49758 472 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 NR0B1P51843 470 aaKnown RBP13.02□□□□□ -0.32
LIG3-205ENST00000585941 TUBA1BP68363 451 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 PLCXD2Q0VAA5 305 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 SKP2Q13309 424 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 AQP6Q13520 282 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 SPCS2Q15005 226 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 MED22Q15528 200 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 AADACL4Q5VUY2 407 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 ZNF385CQ66K41 422 aaPredicted RBP13.02□□□□□ -0.32
LIG3-205ENST00000585941 HSDL2Q6YN16 418 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 RTL4Q6ZR62 310 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 TUBA1AQ71U36 451 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 ANKRD37Q7Z713 158 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 OAFQ86UD1 273 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 NANOGP1Q8N7R0 232 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 ZNF441Q8N8Z8 693 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 SLC38A9Q8NBW4 561 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 AGBL5Q8NDL9 886 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 OR52I1Q8NGK6 324 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 OR2I1PQ8NGU4 316 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 PHOSPHO1Q8TCT1 267 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 LGALS12Q96DT0 336 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms