RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 RRM2BQ7LG56 351 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 NKAIN4Q8IVV8 208 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 APLFQ8IW19 511 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-209ENST00000573474 CADM2Q8N3J6 435 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 DHRSXQ8N5I4 330 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 AQP11Q8NBQ7 271 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 OR4K5Q8NGD3 323 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 OR9Q2Q8NGE9 314 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 ARSGQ96EG1 525 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 NAF1Q96HR8 494 aaKnown RBP12.5□□□□□ -0.41
CCDC40-209ENST00000573474 MPP4Q96JB8 637 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 HS6ST2Q96MM7 605 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 PRSS27Q9BQR3 290 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 CPNE5Q9HCH3 593 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 SH2D2AQ9NP31 389 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 KRT84Q9NSB2 600 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 STMN3Q9NZ72 180 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 ABI3Q9P2A4 366 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 ICAM5Q9UMF0 924 aa12.5□□□□□ -0.41
CCDC40-209ENST00000573474 IGLV3-32A0A0A0MS00 114 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 ARGFXA6NJG6 315 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 CDK2AP1O14519 115 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 ADAP00813 363 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 GASTP01350 101 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 PRKAR1AP10644 381 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 WT1P19544 449 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-209ENST00000573474 PTGDSP41222 190 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 SUMO3P55854 103 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-209ENST00000573474 MERTKQ12866 999 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 ZIK1Q3SY52 487 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-209ENST00000573474 CMPK2Q5EBM0 449 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 C6orf52Q5T4I8 152 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 WLSQ5T9L3 541 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 ABHD17BQ5VST6 288 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 SLC22A10Q63ZE4 541 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 BICRALQ6AI39 1079 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 PGBD2Q6P3X8 592 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 MBOAT2Q6ZWT7 520 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 RNF113BQ8IZP6 322 aaKnown RBP12.49□□□□□ -0.41
CCDC40-209ENST00000573474 BEST3Q8N1M1 668 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 GALNT16Q8N428 558 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF248Q8NDW4 579 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF563Q8TA94 476 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 PIGXQ8TBF5 258 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 RNF217Q8TC41 542 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 GPR119Q8TDV5 335 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 PAQR8Q8TEZ7 354 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 KCNE4Q8WWG9 221 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 TFAP2CQ92754 450 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 CCNL2Q96S94 520 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-209ENST00000573474 DGCR6LQ9BY27 220 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 DPH1Q9BZG8 443 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 TOR3AQ9H497 397 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 GALNT9Q9HCQ5 603 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 PAPOLBQ9NRJ5 636 aaKnown RBP12.49□□□□□ -0.41
CCDC40-209ENST00000573474 CNIH4Q9P003 139 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 PPP4R1LQ9P1A2 415 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 POLHQ9Y253 713 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 POFUT2Q9Y2G5 429 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 WIF1Q9Y5W5 379 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 AP4B1Q9Y6B7 739 aa12.49□□□□□ -0.41
CCDC40-209ENST00000573474 ANKRD33BA6NCL7 494 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 C2orf72A6NCS6 295 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 ANKUB1A6NFN9 424 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 H0YAE9 185 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 DENRO43583 198 aaKnown RBP12.48□□□□□ -0.41
CCDC40-209ENST00000573474 MITFO75030 526 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-209ENST00000573474 PNMTP11086 282 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 GP1BBP13224 206 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 CAPGP40121 348 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 RBM34P42696 430 aaKnown RBP12.48□□□□□ -0.41
CCDC40-209ENST00000573474 SLC1A3P43003 542 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 ST13P50502 369 aaKnown RBP12.48□□□□□ -0.41
CCDC40-209ENST00000573474 UGT2B15P54855 530 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 IL1RL1Q01638 556 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 COL28A1Q2UY09 1125 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 ALG10BQ5I7T1 473 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 ZNF468Q5VIY5 522 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-209ENST00000573474 C1orf94Q6P1W5 598 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 LINC00114Q6XXX2 140 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 ZER1Q7Z7L7 766 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 GALNT5Q7Z7M9 940 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 CYP4Z2PQ8N1L4 340 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 GNPDA2Q8TDQ7 276 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 TMEM255BQ8WV15 326 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 TMEM239Q8WW34 195 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 CYGBQ8WWM9 190 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 GTPBP3Q969Y2 492 aaKnown RBP12.48□□□□□ -0.41
CCDC40-209ENST00000573474 C3orf49Q96BT1 292 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 FRMD6Q96NE9 622 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 MBOAT4Q96T53 435 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 NIPSNAP1Q9BPW8 284 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 ADI1Q9BV57 179 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 ANGPTL4Q9BY76 406 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 UCK2Q9BZX2 261 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 C12orf10Q9HB07 376 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 KRCC1Q9NPI7 259 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-209ENST00000573474 ENOPH1Q9UHY7 261 aa12.48□□□□□ -0.41
CCDC40-209ENST00000573474 EXPH5Q8NEV8 1989 aa12.47□□□□□ -0.41
CCDC40-209ENST00000573474 C17orf51A8MQB3 221 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms