RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SLC39A3Q9BRY0 314 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 WDR55Q9H6Y2 383 aaPredicted RBP13.28□□□□□ -0.28
CLN3-213ENST00000565047 GLRX2Q9NS18 164 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 MCTS1Q9ULC4 181 aaKnown RBP13.28□□□□□ -0.28
CLN3-213ENST00000565047 PROCRQ9UNN8 238 aa13.28□□□□□ -0.28
CLN3-213ENST00000565047 MAP1AP78559 2803 aaPredicted RBP13.27□□□□□ -0.28
CLN3-213ENST00000565047 HEATR5AQ86XA9 2040 aa13.27□□□□□ -0.28
CLN3-213ENST00000565047 GTPBP1O00178 669 aaKnown RBP13.27□□□□□ -0.29
CLN3-213ENST00000565047 CPSF4O95639 269 aaKnown RBP13.27□□□□□ -0.29
CLN3-213ENST00000565047 RAF1P04049 648 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 UBL4AP11441 157 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 DNASE1P24855 282 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 AGTR1P30556 359 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 CDKN2CP42773 168 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 MAGOHP61326 146 aaKnown RBP13.27□□□□□ -0.29
CLN3-213ENST00000565047 QPRTQ15274 297 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 POU4F3Q15319 338 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 TNFAIP8L2Q6P589 184 aaPredicted RBP13.27□□□□□ -0.29
CLN3-213ENST00000565047 FRRS1Q6ZNA5 592 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 TGIF2LYQ8IUE0 185 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 KRTAP1-3Q8IUG1 177 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 VPS37AQ8NEZ2 397 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 OIT3Q8WWZ8 545 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 ROBO4Q8WZ75 1007 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 RAB8BQ92930 207 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 INPP5KQ9BT40 448 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 POLE3Q9NRF9 147 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 C6orf203Q9P0P8 240 aaPredicted RBP13.27□□□□□ -0.29
CLN3-213ENST00000565047 PCDHGB4Q9UN71 923 aa13.27□□□□□ -0.29
CLN3-213ENST00000565047 C9JVG2 144 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 HMGN4O00479 90 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 ADAM11O75078 769 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 PGRP06401 933 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 ME2P23368 584 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 SFTPDP35247 375 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 MVDP53602 400 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 NME5P56597 212 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 MAPK11Q15759 364 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 DEFB113Q30KQ7 82 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 TMEM176BQ3YBM2 270 aaPredicted RBP13.26□□□□□ -0.29
CLN3-213ENST00000565047 ZNF550Q7Z398 422 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 CXorf67Q86X51 503 aaPredicted RBP13.26□□□□□ -0.29
CLN3-213ENST00000565047 ABHD3Q8WU67 409 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 XAGE5Q8WWM1 108 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 ROPN1LQ96C74 230 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 HS3ST6Q96QI5 342 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 THUMPD3Q9BV44 507 aaKnown RBP13.26□□□□□ -0.29
CLN3-213ENST00000565047 PRRG4Q9BZD6 226 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 DLL4Q9NR61 685 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 SLC6A13Q9NSD5 602 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 EXD2Q9NVH0 621 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 MARCOQ9UEW3 520 aaPredicted RBP13.26□□□□□ -0.29
CLN3-213ENST00000565047 EMC9Q9Y3B6 208 aa13.26□□□□□ -0.29
CLN3-213ENST00000565047 GOLGA8QA0A0J9YX86 632 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 GOLGA8OA6NCC3 632 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 CCDC154A6NI56 674 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 GOLGA8NF8WBI6 632 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 KLF11O14901 512 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 CASKO14936 926 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 KLF4O43474 513 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 SYNGR4O95473 234 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 H6PDO95479 791 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 AGR2O95994 175 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 KLK2P20151 261 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 ENPP1P22413 925 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 HOXC12P31275 282 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 S100A3P33764 101 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 SESN3P58005 492 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 RAC3P60763 192 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 ADAM8P78325 824 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 CHRNEQ04844 493 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 SELENBP1Q13228 472 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 CBFBQ13951 182 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 SLC9B1Q4ZJI4 515 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 NUFIP2Q7Z417 695 aaKnown RBP13.25□□□□□ -0.29
CLN3-213ENST00000565047 GABRG1Q8N1C3 465 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 ZNF614Q8N883 585 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 MGARPQ8TDB4 240 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 ZFP90Q8TF47 636 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 ST8SIA1Q92185 356 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 ZNF75CPQ92670 426 aaPredicted RBP13.25□□□□□ -0.29
CLN3-213ENST00000565047 CPNE4Q96A23 557 aaPredicted RBP13.25□□□□□ -0.29
CLN3-213ENST00000565047 SLC35A5Q9BS91 424 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 QRSL1Q9H0R6 528 aaKnown RBP13.25□□□□□ -0.29
CLN3-213ENST00000565047 SLC38A1Q9H2H9 487 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 MANSC1Q9H8J5 431 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 GP6Q9HCN6 339 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 ACER3Q9NUN7 267 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 WDR45Q9Y484 360 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 MTORP42345 2549 aa13.25□□□□□ -0.29
CLN3-213ENST00000565047 CLDN24A6NM45 220 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 TRPC5OSA6NMA1 111 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 GJE1A6NN92 205 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 SLCO1B7G3V0H7 640 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 GCM2O75603 506 aaPredicted RBP13.24□□□□□ -0.29
CLN3-213ENST00000565047 NUDT14O95848 222 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 CSTAP01040 98 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 CHRM4P08173 479 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 UBTFL6P0CB48 400 aaPredicted RBP13.24□□□□□ -0.29
CLN3-213ENST00000565047 KITP10721 976 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms