RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 GPATCH2Q9NW75 528 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 PRSS50Q9UI38 385 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 ACTL7BQ9Y614 415 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 CUBNO60494 3623 aa14.96□□□□□ -0.02
CLN3-211ENST00000564091 A0A1W2PP18 115 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 PEX11AO75192 247 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 LYZL6O75951 148 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 C6orf47O95873 294 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 FGF4P08620 206 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 SLC7A1P30825 629 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 ATP12AP54707 1039 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 SUMO3P55854 103 aaPredicted RBP14.95□□□□□ -0.02
CLN3-211ENST00000564091 PTGR1Q14914 329 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 P2RY6Q15077 328 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 STK11Q15831 433 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 PGGHGQ32M88 737 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 ARL13AQ5H913 290 aaPredicted RBP14.95□□□□□ -0.02
CLN3-211ENST00000564091 BHLHA15Q7RTS1 189 aaPredicted RBP14.95□□□□□ -0.02
CLN3-211ENST00000564091 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.95□□□□□ -0.02
CLN3-211ENST00000564091 SLC43A2Q8N370 569 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 SPATA3Q8NHX4 192 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 PIWIL2Q8TC59 973 aaKnown RBP14.95□□□□□ -0.02
CLN3-211ENST00000564091 AGR3Q8TD06 166 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 MRGPRX4Q96LA9 322 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 PSD2Q9BQI7 771 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 C1orf50Q9BV19 199 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 POTEKPQ9BYX7 375 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 SLCO5A1Q9H2Y9 848 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 MID2Q9UJV3 735 aa14.95□□□□□ -0.02
CLN3-211ENST00000564091 FAF1Q9UNN5 650 aaPredicted RBP14.95□□□□□ -0.02
CLN3-211ENST00000564091 TMEM114B3SHH9 223 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 NPIPB9F8W1W9 429 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 KIF2AO00139 706 aaPredicted RBP14.94□□□□□ -0.02
CLN3-211ENST00000564091 RAMP1O60894 148 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 IGHV4-39P01824 125 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 DDX5P17844 614 aaKnown RBP14.94□□□□□ -0.02
CLN3-211ENST00000564091 PTNP21246 168 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 ALDH3A1P30838 453 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 CCR4P51679 360 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 RAC3P60763 192 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 QPRTQ15274 297 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 ETFDHQ16134 617 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 KRTCAP2Q8N6L1 136 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 TMCO5AQ8N6Q1 288 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 OR56A1Q8NGH5 318 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 OR5D16Q8NGK9 328 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 MECRQ9BV79 373 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 TRIM2Q9C040 744 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 BCO1Q9HAY6 547 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 GDF2Q9UK05 429 aaPredicted RBP14.94□□□□□ -0.02
CLN3-211ENST00000564091 DTNAQ9Y4J8 743 aa14.94□□□□□ -0.02
CLN3-211ENST00000564091 ADAM11O75078 769 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 SLU7O95391 586 aaKnown RBP14.93□□□□□ -0.02
CLN3-211ENST00000564091 H6PDO95479 791 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 CD8AP01732 235 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 MAPK1P28482 360 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 RPL3P39023 403 aaKnown RBP14.93□□□□□ -0.02
CLN3-211ENST00000564091 OR3A2P47893 321 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 C21orf58P58505 322 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 RASGEF1BQ0VAM2 473 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 SELENBP1Q13228 472 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 SLC25A53Q5H9E4 307 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 Q6ZT83 130 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 OR5W2Q8NH69 310 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 OR5AK3PQ8NH89 298 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 KIF18AQ8NI77 898 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 PSMA8Q8TAA3 256 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 PPP3R2Q96LZ3 170 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 C3orf30Q96M34 536 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 OR5B2Q96R09 309 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 OR7D2Q96RA2 312 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 ZNF300Q96RE9 604 aaPredicted RBP14.93□□□□□ -0.02
CLN3-211ENST00000564091 REPIN1Q9BWE0 567 aaKnown RBP14.93□□□□□ -0.02
CLN3-211ENST00000564091 QRSL1Q9H0R6 528 aaKnown RBP14.93□□□□□ -0.02
CLN3-211ENST00000564091 CISD1Q9NZ45 108 aaKnown RBP14.93□□□□□ -0.02
CLN3-211ENST00000564091 KLHL9Q9P2J3 617 aa14.93□□□□□ -0.02
CLN3-211ENST00000564091 ESPNB1AK53 854 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 SMAD9O15198 467 aaKnown RBP14.92□□□□□ -0.02
CLN3-211ENST00000564091 ZNF264O43296 627 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 NPHS1O60500 1241 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 EIF4E2O60573 245 aaKnown RBP14.92□□□□□ -0.02
CLN3-211ENST00000564091 CYP7B1O75881 506 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 TP53P04637 393 aaPredicted RBP14.92□□□□□ -0.02
CLN3-211ENST00000564091 THBS1P07996 1170 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 KRT16P08779 473 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 UBL4AP11441 157 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 RPS26P62854 115 aaKnown RBP14.92□□□□□ -0.02
CLN3-211ENST00000564091 PPA1Q15181 289 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 TIGD2Q4W5G0 525 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 ATP6AP1LQ52LC2 224 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 XKR7Q5GH72 579 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 PDZK1Q5T2W1 519 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 IL23RQ5VWK5 629 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 ZCCHC23Q6ZST2 131 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 OLIG3Q7RTU3 272 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 TOR1AIP2Q8NFQ8 470 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 OR2W6PQ8NHA6 318 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 ZNF75CPQ92670 426 aaPredicted RBP14.92□□□□□ -0.02
CLN3-211ENST00000564091 COQ8BQ96D53 544 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 SDF2Q99470 211 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms