RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 RINLQ6ZS11 566 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 GRINAQ7Z429 371 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 YRDCQ86U90 279 aaKnown RBP9.14□□□□□ -0.95
USP3-216ENST00000559873 SPPL2CQ8IUH8 684 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 PM20D2Q8IYS1 436 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 GTPBP8Q8N3Z3 284 aaPredicted RBP9.14□□□□□ -0.95
USP3-216ENST00000559873 RNF148Q8N7C7 305 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 SMYD1Q8NB12 490 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 FBXO27Q8NI29 283 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 GPR119Q8TDV5 335 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 CNOT9Q92600 299 aaKnown RBP9.14□□□□□ -0.95
USP3-216ENST00000559873 POP5Q969H6 163 aaKnown RBP9.14□□□□□ -0.95
USP3-216ENST00000559873 MCUR1Q96AQ8 359 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 TAMM41Q96BW9 452 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 NSMCE2Q96MF7 247 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 TRIM15Q9C019 465 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 SERINC1Q9NRX5 453 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 SAMD4AQ9UPU9 718 aaKnown RBP9.14□□□□□ -0.95
USP3-216ENST00000559873 RPH3AQ9Y2J0 694 aaPredicted RBP9.14□□□□□ -0.95
USP3-216ENST00000559873 SNX13Q9Y5W8 968 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 LIPGQ9Y5X9 500 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 SPENQ96T58 3664 aaKnown RBP9.14□□□□□ -0.95
USP3-216ENST00000559873 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 CLDN24A6NM45 220 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 AP3D1O14617 1153 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 OIP5O43482 229 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 SLC19A2O60779 497 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 TPOP07202 933 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 PEPDP12955 493 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 PRKCAP17252 672 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 TCN1P20061 433 aaPredicted RBP9.13□□□□□ -0.95
USP3-216ENST00000559873 TCEA1P23193 301 aaKnown RBP9.13□□□□□ -0.95
USP3-216ENST00000559873 FKBP2P26885 142 aaKnown RBP9.13□□□□□ -0.95
USP3-216ENST00000559873 IFNA8P32881 189 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 PTGER4P35408 488 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 KCNJ5P48544 419 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 MAP2K6P52564 334 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 HSF1Q00613 529 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 GABPB1Q06547 395 aaPredicted RBP9.13□□□□□ -0.95
USP3-216ENST00000559873 DMTNQ08495 405 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 FOXF1Q12946 379 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 CYBRD1Q53TN4 286 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 WBP2NLQ6ICG8 309 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 C6orf89Q6UWU4 347 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 ARSKQ6UWY0 536 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 MEIOBQ8N635 442 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 SLC25A43Q8WUT9 341 aaPredicted RBP9.13□□□□□ -0.95
USP3-216ENST00000559873 ABTB1Q969K4 478 aaPredicted RBP9.13□□□□□ -0.95
USP3-216ENST00000559873 BTBD10Q9BSF8 475 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 TRIM2Q9C040 744 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 ACER3Q9NUN7 267 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 RLIMQ9NVW2 624 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 TAS2R1Q9NYW7 299 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 SELENONQ9NZV5 590 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 RPS6KB2Q9UBS0 482 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 EGFL7Q9UHF1 273 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 ACAD8Q9UKU7 415 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 SLC6A5Q9Y345 797 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 HRH3Q9Y5N1 445 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 POLEQ07864 2286 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 EML6Q6ZMW3 1958 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 MYO18BQ8IUG5 2567 aa9.13□□□□□ -0.95
USP3-216ENST00000559873 ZNF407Q9C0G0 2248 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 SHANK1Q9Y566 2161 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 OR2M5A3KFT3 312 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 NPIPA2E9PIF3 369 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 NPIPA3F8WFD2 350 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 H0Y3Z8 333 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 H3BML4 177 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 ETV2O00321 342 aaPredicted RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 ARPC2O15144 300 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 ZIC3O60481 467 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 FMO6PO60774 539 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 WDR1O75083 606 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 DNAJC8O75937 253 aaPredicted RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 ZNF682O95780 498 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 LGI1O95970 557 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 SERPINA1P01009 418 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 FESP07332 822 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 GKN3PP0CG01 181 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 GABRA1P14867 456 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 BMP7P18075 431 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 CD247P20963 164 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 APOBEC1P41238 236 aaKnown RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 SLC1A3P43003 542 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 IDH2P48735 452 aaKnown RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 GFRA1P56159 465 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 DLX5P56178 289 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 RPS3AP61247 264 aaKnown RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 SELENOWP63302 87 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 CRYZQ08257 329 aaKnown RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 MERTKQ12866 999 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 CEACAM7Q14002 265 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 FXNQ16595 210 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 SLC25A53Q5H9E4 307 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 PDSS1Q5T2R2 415 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 VASNQ6EMK4 673 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 GLYATQ6IB77 296 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 C3orf33Q6P1S2 294 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 CHMP1BQ7LBR1 199 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms