RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 RPS6KB2Q9UBS0 482 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 GPN3Q9UHW5 284 aaPredicted RBP11.64□□□□□ -0.55
USP3-213ENST00000559711 CDH10Q9Y6N8 788 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 CACNA1HO95180 2353 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 A0A087WUJ7 227 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 UNC119BA6NIH7 251 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 OR6C70A6NIJ9 312 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 TMEM200CA6NKL6 621 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 GTPBP1O00178 669 aaKnown RBP11.63□□□□□ -0.55
USP3-213ENST00000559711 ZNF264O43296 627 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 OIP5O43482 229 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 ENTPD6O75354 484 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 KLF7O75840 302 aaPredicted RBP11.63□□□□□ -0.55
USP3-213ENST00000559711 CDK1P06493 297 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 IFI30P13284 250 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 ACVR2AP27037 513 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 MASP1P48740 699 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 SLC26A5P58743 744 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 RAB15P59190 212 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 COPZ1P61923 177 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 INSM1Q01101 510 aaPredicted RBP11.63□□□□□ -0.55
USP3-213ENST00000559711 MVKQ03426 396 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 DCAF12Q5T6F0 453 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 CDCP2Q5VXM1 449 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 DESI1Q6ICB0 168 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 AHSA2Q719I0 299 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 CADM2Q8N3J6 435 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 TCEANCQ8N8B7 351 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 RNF217Q8TC41 542 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 BRIX1Q8TDN6 353 aaKnown RBP11.63□□□□□ -0.55
USP3-213ENST00000559711 MR1Q95460 341 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 BPIFA2Q96DR5 249 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 ZPBPQ9BS86 351 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 TSSK6Q9BXA6 273 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 DPH1Q9BZG8 443 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 YIPF3Q9GZM5 350 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 LHPPQ9H008 270 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 RSL24D1Q9UHA3 163 aaKnown RBP11.63□□□□□ -0.55
USP3-213ENST00000559711 CARD8Q9Y2G2 431 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 LOXL2Q9Y4K0 774 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 B3GALT1Q9Y5Z6 326 aa11.63□□□□□ -0.55
USP3-213ENST00000559711 EFCAB10A6NFE3 127 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 CCDC160A6NGH7 325 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 C9J4A7 227 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 TLX2O43763 284 aaPredicted RBP11.62□□□□□ -0.55
USP3-213ENST00000559711 PRKYO43930 277 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 FADS1O60427 444 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 EIF4E2O60573 245 aaKnown RBP11.62□□□□□ -0.55
USP3-213ENST00000559711 RFPL3O75679 317 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 PIPP12273 146 aaPredicted RBP11.62□□□□□ -0.55
USP3-213ENST00000559711 DCKP27707 260 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 ETV5P41161 510 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 NUDT6P53370 316 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 NRG3P56975 720 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 NCF4Q15080 339 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 MEDAGQ5VYS4 303 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 WBP2NLQ6ICG8 309 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 CBLN3Q6UW01 205 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 CLVS1Q8IUQ0 354 aaPredicted RBP11.62□□□□□ -0.55
USP3-213ENST00000559711 ALDH16A1Q8IZ83 802 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 GATSQ8NAP1 163 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 OR5L2Q8NGL0 311 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 ZNF420Q8TAQ5 688 aaPredicted RBP11.62□□□□□ -0.55
USP3-213ENST00000559711 C3orf49Q96BT1 292 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 C8orf44Q96CB5 159 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 PRRG3Q9BZD7 231 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 RTN4RQ9BZR6 473 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 ACOT13Q9NPJ3 140 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 ATP13A2Q9NQ11 1180 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 SELENONQ9NZV5 590 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 ICAM5Q9UMF0 924 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 NPFFR2Q9Y5X5 522 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 TRBV11-1A0A0K0K1C0 115 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 ZNF99A8MXY4 864 aaPredicted RBP11.62□□□□□ -0.55
USP3-213ENST00000559711 PRR33A8MZF0 331 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 PTP4A3O75365 173 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 PPM1BO75688 479 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 ZFAND5O76080 213 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 UMODP07911 640 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 NAGAP17050 411 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 MAP2K4P45985 399 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 SLC6A8P48029 635 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 FXYD6P3P58550 94 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 EFR3AQ14156 821 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 SNAPC1Q16533 368 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 ISXQ2M1V0 245 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 SYT6Q5T7P8 510 aaPredicted RBP11.62□□□□□ -0.55
USP3-213ENST00000559711 RPL13AP3Q6NVV1 102 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 GALNT6Q8NCL4 622 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 OR4Q3Q8NH05 313 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 TMEM163Q8TC26 289 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 RORBQ92753 470 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 LIN37Q96GY3 246 aaPredicted RBP11.62□□□□□ -0.55
USP3-213ENST00000559711 SLC38A2Q96QD8 506 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 PHOX2BQ99453 314 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 DOK1Q99704 481 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 TEX12Q9BXU0 123 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 SLC19A3Q9BZV2 496 aa11.62□□□□□ -0.55
USP3-213ENST00000559711 LIN28AQ9H9Z2 209 aaKnown RBP11.62□□□□□ -0.55
USP3-213ENST00000559711 TBC1D23Q9NUY8 699 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms