RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CHD1O14646 1710 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 MEX3AA1L020 520 aaKnown RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 BCLAF3A2AJT9 711 aaKnown RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 ZNF879B4DU55 563 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 H3BMQ9 156 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 GOLGA8SH3BPF8 625 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 FCN1O00602 326 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 RNF13O43567 381 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 RAMP1O60894 148 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 DNAJB6O75190 326 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 TRIM3O75382 744 aaPredicted RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 UPK3AO75631 287 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 ZFAND5O76080 213 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 DIRAS1O95057 198 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 SMC2O95347 1197 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 IGHV3-9P01782 118 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 KRT14P02533 472 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 HCKP08631 526 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 RALBP11234 206 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 ETS2P15036 469 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 ZNF26P17031 533 aaPredicted RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 ZNF3P17036 446 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 IMPDH1P20839 514 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 HNRNPH3P31942 346 aaKnown RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 SPRP35270 261 aaPredicted RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 MAGEA1P43355 309 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 SYKP43405 635 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 CSRP3P50461 194 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 ATP4BP51164 291 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 ARHGDIAP52565 204 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 TMEM50BP56557 158 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 GSCP56915 257 aaPredicted RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 MAP3K7CLP57077 242 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 RPS8P62241 208 aaKnown RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 CTAG1AP78358 180 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 ST3GAL3Q11203 375 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 RAB40BQ12829 278 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 CALCOCO2Q13137 446 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 LAGE3Q14657 143 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 CCL14Q16627 93 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 SLC25A52Q3SY17 297 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 TIGITQ495A1 244 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 C14orf28Q4W4Y0 310 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 C6orf226Q5I0X4 101 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 BEND3Q5T5X7 828 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 LCE1AQ5T7P2 110 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 CARD17Q5XLA6 110 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 LRRC66Q68CR7 880 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 REP15Q6BDI9 236 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 FAHD2BQ6P2I3 314 aaPredicted RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 TMCO2Q7Z6W1 182 aaPredicted RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 COMTD1Q86VU5 262 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 NR2C2APQ86WQ0 139 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 SLC35F2Q8IXU6 374 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 FAM9CQ8IZT9 166 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 FGFRL1Q8N441 504 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 SLC22A8Q8TCC7 542 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 AENQ8WTP8 325 aaKnown RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 MAIP1Q8WWC4 291 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 CRYGNQ8WXF5 182 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 STARD8Q92502 1023 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 WBP1Q96G27 269 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 FAHD2AQ96GK7 314 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 TIMD4Q96H15 378 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 ART5Q96L15 291 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 PRICKLE1Q96MT3 831 aaPredicted RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 SH3GL1Q99961 368 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 TUBGCP2Q9BSJ2 902 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 OCR1Q9BZK8 76 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 GLT8D2Q9H1C3 349 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 UPF3AQ9H1J1 476 aaKnown RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 EXO5Q9H790 373 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 ABCC13Q9NSE7 274 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 ELOVL2Q9NXB9 296 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 IL20Q9NYY1 176 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 GAB2Q9UQC2 676 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 RASD1Q9Y272 281 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 AK6Q9Y3D8 172 aaKnown RBP2.57□□□□□ -2
TRAV28-201ENST00000557548 NPTNQ9Y639 398 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 MYH15Q9Y2K3 1946 aa2.57□□□□□ -2
TRAV28-201ENST00000557548 IGLV4-3A0A075B6K6 122 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 OR6C74A6NCV1 312 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 SAGE2PA6NJ88 616 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 TCP11X1B4DZS4 312 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 HSBP1L1C9JCN9 74 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 HAS3O00219 553 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 WRBO00258 174 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 NTN3O00634 580 aaPredicted RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 RGS16O15492 202 aaPredicted RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 YKT6O15498 198 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 RS1O15537 224 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 DFNA5O60443 496 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 RAMP3O60896 148 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 ZNF432O94892 652 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 OTCP00480 354 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 IGLV1-44P01699 117 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 IVLP07476 585 aa2.56□□□□□ -2
TRAV28-201ENST00000557548 TROVE2P10155 538 aaKnown RBP eCLIP2.56□□□□□ -2
TRAV28-201ENST00000557548 ATP1B2P14415 290 aaPredicted RBP2.56□□□□□ -2
TRAV28-201ENST00000557548 PVRP15151 417 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms