RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 CHAC2Q8WUX2 184 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TMEM239Q8WW34 195 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ISG20Q96AZ6 181 aaKnown RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ST6GAL2Q96JF0 529 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 OR14A2Q96R54 314 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 CDCA4Q9BXL8 241 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 MFFQ9GZY8 342 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 MCCC2Q9HCC0 563 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 SPHK2Q9NRA0 654 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 C1GALT1Q9NS00 363 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TRAPPC13A5PLN9 417 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 PRAF2O60831 178 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 PEX14O75381 377 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 SCGNO76038 276 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ETHE1O95571 254 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 NFATC1O95644 943 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 POU3F3P20264 500 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 MMP11P24347 488 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ITGB8P26012 769 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 IMPA1P29218 277 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 HTR1FP30939 366 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TPMTP51580 245 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 UBE2MP61081 183 aaKnown RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF33BQ06732 778 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ILKQ13418 452 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 STK11Q15831 433 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 METAP1DQ6UB28 335 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 DPPA4Q7L190 304 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 DGLUCYQ7Z3D6 616 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 PXKQ7Z7A4 578 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 CD163Q86VB7 1156 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 GTPBP8Q8N3Z3 284 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 DEFB119Q8N690 84 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 L3MBTL4Q8NA19 623 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ACBD4Q8NC06 268 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 GAL3ST3Q96A11 431 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 DEFB118Q96PH6 123 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TREX2Q9BQ50 279 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 CHST8Q9H2A9 424 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ACTL8Q9H568 366 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 BIN3Q9NQY0 253 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 QPCTLQ9NXS2 382 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 IGLV3-10A0A075B6K4 115 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 A0A0B4J2A0 478 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TRDV1A0A1B0GX56 115 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ACOD1A6NK06 481 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TXNL1O43396 289 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 IGFALSP35858 605 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ACVR1Q04771 509 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 DECR1Q16698 335 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 CHRFAM7AQ494W8 412 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 GLT8D1Q68CQ7 371 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 AWAT2Q6E213 333 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF322Q6U7Q0 402 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TMEM25Q86YD3 366 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF480Q8WV37 535 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 IGSF21Q96ID5 467 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 MS4A4EQ96PG1 132 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TAPBPLQ9BX59 468 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 SMIM3Q9BZL3 60 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ULBP3Q9BZM4 244 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 DUSP21Q9H596 190 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 NT5DC2Q9H857 520 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 HHATLQ9HCP6 504 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 SHPKQ9UHJ6 478 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 UNCXA6NJT0 531 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 GPR89AB7ZAQ6 455 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 H7C1C5 153 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ADAM12O43184 909 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 CYB5AP00167 134 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 IGLV3-25P01717 112 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 GPR89BP0CG08 455 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 CLUP10909 449 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 RAB6AP20340 208 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 LCN6P62502 163 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 SHC2P98077 582 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 IFITM2Q01629 132 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 GRM7Q14831 915 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 SLC25A35Q3KQZ1 300 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 PUS10Q3MIT2 529 aaKnown RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ACSM5Q6NUN0 579 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 MBOAT2Q6ZWT7 520 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TMEFF1Q8IYR6 380 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF454Q8N9F8 522 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 IRF7Q92985 503 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TSACCQ96A04 125 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ARSGQ96EG1 525 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 PHB2Q99623 299 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 SYT4Q9H2B2 425 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 LINC00597Q9H2U6 94 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 HRH4Q9H3N8 390 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 RETREG1Q9H6L5 497 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 LIN7BQ9HAP6 207 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF701Q9NV72 531 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 LSM5Q9Y4Y9 91 aaKnown RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 B3GALT1Q9Y5Z6 326 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 NAP1L6A6NFF2 107 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TTLL8A6PVC2 850 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 M0QYG6 137 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms