RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	KLF13	Q9Y2Y9	288 aa	Predicted RBP	4.26	□□□□□ -1.73
ATXN3-238	ENST00000556288	TMED5	Q9Y3A6	229 aa		4.26	□□□□□ -1.73
ATXN3-238	ENST00000556288	CLDN16	Q9Y5I7	305 aa		4.26	□□□□□ -1.73
ATXN3-238	ENST00000556288	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	4.26	□□□□□ -1.73
ATXN3-238	ENST00000556288	CACNA1C	Q13936	2221 aa		4.26	□□□□□ -1.73
ATXN3-238	ENST00000556288	SPTA1	P02549	2419 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	HIVEP3	Q5T1R4	2406 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288		A0A1W2PQ72	361 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288		C9JVG2	144 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	NPIPA2	E9PIF3	369 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	NPIPA3	F8WFD2	350 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	SLCO1B7	G3V0H7	640 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	CCL21	O00585	134 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	LRRTM2	O43300	516 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	EMC8	O43402	210 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ASNA1	O43681	348 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	HS6ST1	O60243	411 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	NME2P1	O60361	137 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZNF354A	O60765	605 aa	Predicted RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	NEURL1	O76050	574 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	WISP2	O76076	250 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	SORBS2	O94875	1100 aa	Known RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	CBX6	O95503	412 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ANP32D	O95626	131 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	C6orf47	O95873	294 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ATP1B1	P05026	303 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	TPO	P07202	933 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	VIM	P08670	466 aa	Known RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	DHRS4L1	P0CG22	281 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	CCL3	P10147	92 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	LAMP1	P11279	417 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZNF24	P17028	368 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	NCF2	P19878	526 aa	Predicted RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	PRPS1L1	P21108	318 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	S1PR1	P21453	382 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	DRD5	P21918	477 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	GPX3	P22352	226 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	MST1	P26927	711 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	GDF1	P27539	372 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	EPHA3	P29320	983 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	S100A3	P33764	101 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	GALNS	P34059	522 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	CHI3L1	P36222	383 aa	Predicted RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	RPL3	P39023	403 aa	Known RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	PPIC	P45877	212 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	TRPC1	P48995	793 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	CCT3	P49368	545 aa	Known RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	CLK3	P49761	638 aa	Known RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	DGKQ	P52824	942 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	DIO3	P55073	304 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	UFM1	P61960	85 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	HSF1	Q00613	529 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	PLCXD2	Q0VAA5	305 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	FUT7	Q11130	342 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	SLC10A1	Q14973	349 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	KIAA0040	Q15053	153 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	MPEG1	Q2M385	716 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR5M10	Q6IEU7	315 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR4F3	Q6IEY1	312 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	RGS7BP	Q6MZT1	257 aa	Predicted RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	RPUSD3	Q6P087	351 aa	Known RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	C3P1	Q6ZMU1	363 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZNF621	Q6ZSS3	439 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	IKBIP	Q70UQ0	350 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	NUP54	Q7Z3B4	507 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	SPATA19	Q7Z5L4	167 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	GALNT10	Q86SR1	603 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	FJX1	Q86VR8	437 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	SLC22A16	Q86VW1	577 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ANKRD46	Q86W74	232 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	KIRREL3	Q8IZU9	778 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	CLEC4F	Q8N1N0	589 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	FAM109A	Q8N4B1	249 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZNF615	Q8N8J6	731 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	VPS37A	Q8NEZ2	397 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	BOD1L1	Q8NFC6	3051 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR2M7	Q8NG81	312 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR7G2	Q8NG99	324 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR10G3	Q8NGC4	313 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR4N2	Q8NGD1	307 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR4A15	Q8NGL6	344 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR5M9	Q8NGP3	310 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR8K3	Q8NH51	312 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR5AK3P	Q8NH89	298 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	CEP70	Q8NHQ1	597 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	NUBPL	Q8TB37	319 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	TMBIM1	Q969X1	311 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	MIB2	Q96AX9	1013 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	EFHD2	Q96C19	240 aa	Predicted RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	NMD3	Q96D46	503 aa	Known RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	TMCO6	Q96DC7	493 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	SPACA9	Q96E40	222 aa	Predicted RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OMA1	Q96E52	524 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ELP4	Q96EB1	424 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZBED6CL	Q96FA7	236 aa	Predicted RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	OTUB1	Q96FW1	271 aa	Predicted RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	C16orf58	Q96GQ5	468 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	METTL2A	Q96IZ6	378 aa	Known RBP	4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZNF681	Q96N22	645 aa		4.25	□□□□□ -1.73
ATXN3-238	ENST00000556288	AMDHD1	Q96NU7	426 aa		4.25	□□□□□ -1.73

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