RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 EIF3MQ7L2H7 374 aaKnown RBP18.4■□□□□ 0.54
VTI1B-205ENST00000555543 FUNDC1Q8IVP5 155 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 ZZZ3Q8IYH5 903 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 LILRA2Q8N149 483 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 CNEP1R1Q8N9A8 125 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 FAM71CQ8NEG0 241 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 TOR1AIP2Q8NFQ8 470 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 OR2V1Q8NHB1 315 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 GTF2H4Q92759 462 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 STARD4Q96DR4 205 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 THOC1Q96FV9 657 aaKnown RBP18.4■□□□□ 0.54
VTI1B-205ENST00000555543 ITCHQ96J02 903 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 TRNT1Q96Q11 434 aaKnown RBP18.4■□□□□ 0.54
VTI1B-205ENST00000555543 RMND5AQ9H871 391 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 GALNT8Q9NY28 637 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 STOML1Q9UBI4 398 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 FOXD3Q9UJU5 478 aaPredicted RBP18.4■□□□□ 0.54
VTI1B-205ENST00000555543 PACSIN3Q9UKS6 424 aa18.4■□□□□ 0.54
VTI1B-205ENST00000555543 GPC6Q9Y625 555 aaPredicted RBP18.4■□□□□ 0.54
VTI1B-205ENST00000555543 ETV2O00321 342 aaPredicted RBP18.39■□□□□ 0.53
VTI1B-205ENST00000555543 DNAJA2O60884 412 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 KRT75O95678 551 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 CRHP06850 196 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 CD1EP15812 388 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 ADH6P28332 368 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 PGM1P36871 562 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 KIR2DL3P43628 341 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 TXNL4AP83876 142 aaKnown RBP18.39■□□□□ 0.53
VTI1B-205ENST00000555543 HPCAP84074 193 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 CBFBQ13951 182 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 GUSBP1Q15486 140 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 SLC25A53Q5H9E4 307 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 PPP4R4Q6NUP7 873 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 ESPNLQ6ZVH7 1005 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 BTLAQ7Z6A9 289 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 LRRC46Q96FV0 321 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 KLHL15Q96M94 604 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 THUMPD3Q9BV44 507 aaKnown RBP18.39■□□□□ 0.53
VTI1B-205ENST00000555543 RBM24Q9BX46 236 aaKnown RBP18.39■□□□□ 0.53
VTI1B-205ENST00000555543 PAIP1Q9H074 479 aaKnown RBP18.39■□□□□ 0.53
VTI1B-205ENST00000555543 PIGMQ9H3S5 423 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 SLC24A3Q9HC58 644 aa18.39■□□□□ 0.53
VTI1B-205ENST00000555543 ANP32DO95626 131 aa18.38■□□□□ 0.53
VTI1B-205ENST00000555543 ETFAP13804 333 aa18.38■□□□□ 0.53
VTI1B-205ENST00000555543 HOXB9P17482 250 aaPredicted RBP18.38■□□□□ 0.53
VTI1B-205ENST00000555543 ANXA11P50995 505 aaKnown RBP18.38■□□□□ 0.53
VTI1B-205ENST00000555543 HBMQ6B0K9 141 aa18.38■□□□□ 0.53
VTI1B-205ENST00000555543 LRRC74BQ6ZQY2 392 aa18.38■□□□□ 0.53
VTI1B-205ENST00000555543 OIT3Q8WWZ8 545 aa18.38■□□□□ 0.53
VTI1B-205ENST00000555543 MRGPRX4Q96LA9 322 aa18.38■□□□□ 0.53
VTI1B-205ENST00000555543 TPT1P8Q9HAU6 139 aa18.38■□□□□ 0.53
VTI1B-205ENST00000555543 SLC52A3Q9NQ40 469 aa18.38■□□□□ 0.53
VTI1B-205ENST00000555543 LIPT1Q9Y234 373 aa18.38■□□□□ 0.53
VTI1B-205ENST00000555543 ANKRD17O75179 2603 aaKnown RBP18.37■□□□□ 0.53
VTI1B-205ENST00000555543 A8MXE2 369 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 NR5A2O00482 541 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 EDF1O60869 148 aaKnown RBP18.37■□□□□ 0.53
VTI1B-205ENST00000555543 ADAM11O75078 769 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 SMNDC1O75940 238 aaKnown RBP eCLIP18.37■□□□□ 0.53
VTI1B-205ENST00000555543 FCGR2AP12318 317 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 NID1P14543 1247 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 CAPN3P20807 821 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 RPS4Y1P22090 263 aaKnown RBP18.37■□□□□ 0.53
VTI1B-205ENST00000555543 CRATP43155 626 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 CPA2P48052 419 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 BLOC1S3Q6QNY0 202 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 LSRQ86X29 649 aaPredicted RBP18.37■□□□□ 0.53
VTI1B-205ENST00000555543 ATP6V1C2Q8NEY4 427 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 SRXN1Q9BYN0 137 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 OPN3Q9H1Y3 402 aaPredicted RBP18.37■□□□□ 0.53
VTI1B-205ENST00000555543 COQ10BQ9H8M1 238 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 PAQR5Q9NXK6 330 aaPredicted RBP18.37■□□□□ 0.53
VTI1B-205ENST00000555543 CCDC167Q9P0B6 97 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 CLEC4AQ9UMR7 237 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 SLC35A3Q9Y2D2 325 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 PCDHB14Q9Y5E9 798 aa18.37■□□□□ 0.53
VTI1B-205ENST00000555543 AGAP5A6NIR3 686 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 MSTNO14793 375 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 CGAP01215 116 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 NR2F1P10589 423 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 CPOXP36551 454 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 PEX19P40855 299 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 SESN3P58005 492 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 EEF1A1P68104 462 aaKnown RBP18.36■□□□□ 0.53
VTI1B-205ENST00000555543 KCNJ10P78508 379 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 SORDQ00796 357 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 SELENBP1Q13228 472 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 TMEM176BQ3YBM2 270 aaPredicted RBP18.36■□□□□ 0.53
VTI1B-205ENST00000555543 EEF1A1P5Q5VTE0 462 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 TMEM200AQ86VY9 491 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 KIF18BQ86Y91 864 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 MSRB3Q8IXL7 192 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 CCDC168Q8NDH2 2452 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 LINC01560Q8TB33 94 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 CNOT9Q92600 299 aaKnown RBP18.36■□□□□ 0.53
VTI1B-205ENST00000555543 OSTF1Q92882 214 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 PRRG4Q9BZD6 226 aa18.36■□□□□ 0.53
VTI1B-205ENST00000555543 MCTS1Q9ULC4 181 aaKnown RBP18.36■□□□□ 0.53
VTI1B-205ENST00000555543 DSPPQ9NZW4 1301 aa18.35■□□□□ 0.53
VTI1B-205ENST00000555543 SYNGR4O95473 234 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms