RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 ANXA8L1Q5VT79 327 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 OR4F3Q6IEY1 312 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 ALKBH2Q6NS38 261 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 WDR93Q6P2C0 686 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 ZNF704Q6ZNC4 412 aaPredicted RBP11.37□□□□□ -0.59
LINC00643-202ENST00000553426 C22orf34Q6ZV56 151 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 YTHDF3Q7Z739 585 aaKnown RBP11.37□□□□□ -0.59
LINC00643-202ENST00000553426 KRTAP1-3Q8IUG1 177 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 TUSC5Q8IXB3 177 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 OR5D16Q8NGK9 328 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 OR4A15Q8NGL6 344 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 ABHD3Q8WU67 409 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 TMEM234Q8WY98 164 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 PLPPR2Q96GM1 343 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 SLC35G5Q96KT7 338 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 PPP1R36Q96LQ0 422 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 Q96MF0 132 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 SDF2Q99470 211 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 DPY30Q9C005 99 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 KLHL9Q9P2J3 617 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.37□□□□□ -0.59
LINC00643-202ENST00000553426 ARID1AO14497 2285 aa11.37□□□□□ -0.59
LINC00643-202ENST00000553426 RNF103-CHMP3A0A140T963 221 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 NPIPB9F8W1W9 429 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 TM9SF1O15321 606 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 KLF4O43474 513 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 OIP5O43482 229 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 CSTAP01040 98 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 PGCP20142 388 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 LOXP28300 417 aaPredicted RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 SHC1P29353 583 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 ETV4P43268 484 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 RPL14P50914 215 aaKnown RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 RAC3P60763 192 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 ABCE1P61221 599 aaKnown RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 RPS26P62854 115 aaKnown RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 P2RY6Q15077 328 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 QPRTQ15274 297 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 TOMM34Q15785 309 aaPredicted RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 ARHGAP11BQ3KRB8 267 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 TIGD2Q4W5G0 525 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 C3orf33Q6P1S2 294 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 Q71RC1 249 aaPredicted RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 EIF3MQ7L2H7 374 aaKnown RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 ZNF781Q8N8C0 355 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 OR8J2Q8NGG1 315 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 NUDT8Q8WV74 236 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 ST8SIA1Q92185 356 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 HSD17B8Q92506 261 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 ARSGQ96EG1 525 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 PKNOX2Q96KN3 472 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 SMR3AQ99954 134 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 THUMPD3Q9BV44 507 aaKnown RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 SRXN1Q9BYN0 137 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 LAT2Q9GZY6 243 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 CENPHQ9H3R5 247 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 ESRP2Q9H6T0 727 aaKnown RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 AKTIPQ9H8T0 292 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 RAP2CQ9Y3L5 183 aa11.36□□□□□ -0.59
LINC00643-202ENST00000553426 SPIN1Q9Y657 262 aaPredicted RBP11.36□□□□□ -0.59
LINC00643-202ENST00000553426 PRSS51A0A1B0GVH4 220 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 H7C1Q1 480 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 EFNA2O43921 213 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 NTN1O95631 604 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 CPSF4O95639 269 aaKnown RBP11.35□□□□□ -0.59
LINC00643-202ENST00000553426 HEXAP06865 529 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 ENPP1P22413 925 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 UQCRC2P22695 453 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 CLNS1AP54105 237 aaKnown RBP11.35□□□□□ -0.59
LINC00643-202ENST00000553426 CSNK2A1P68400 391 aaPredicted RBP11.35□□□□□ -0.59
LINC00643-202ENST00000553426 HPCAP84074 193 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 RASGEF1BQ0VAM2 473 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 CAPRIN1Q14444 709 aaKnown RBP11.35□□□□□ -0.59
LINC00643-202ENST00000553426 ZNF141Q15928 474 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 DPY19L1Q2PZI1 675 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 NDUFAF6Q330K2 333 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 SLC25A53Q5H9E4 307 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 SFRP5Q5T4F7 317 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 TFAP2EQ6VUC0 442 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 NUFIP2Q7Z417 695 aaKnown RBP11.35□□□□□ -0.59
LINC00643-202ENST00000553426 CLECL1Q8IZS7 167 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 MREGQ8N565 214 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 XAGE5Q8WWM1 108 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 OIT3Q8WWZ8 545 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 KISS1RQ969F8 398 aaPredicted RBP11.35□□□□□ -0.59
LINC00643-202ENST00000553426 S100PBPQ96BU1 408 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 COX4I2Q96KJ9 171 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 OR5B2Q96R09 309 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 KLHDC3Q9BQ90 382 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 GSX2Q9BZM3 304 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 COQ10BQ9H8M1 238 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 SSU72Q9NP77 194 aaKnown RBP11.35□□□□□ -0.59
LINC00643-202ENST00000553426 MKLN1Q9UL63 735 aa11.35□□□□□ -0.59
LINC00643-202ENST00000553426 A0A1W2PNR3 127 aa11.34□□□□□ -0.59
LINC00643-202ENST00000553426 HS3ST1O14792 307 aa11.34□□□□□ -0.59
LINC00643-202ENST00000553426 ANKRD28O15084 1053 aa11.34□□□□□ -0.59
LINC00643-202ENST00000553426 SMAD7O15105 426 aaKnown RBP11.34□□□□□ -0.59
LINC00643-202ENST00000553426 CLOCKO15516 846 aa11.34□□□□□ -0.59
LINC00643-202ENST00000553426 ITM2AO43736 263 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms