RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RPH3ALQ9UNE2 315 aa3.08□□□□□ -1.92
VPS29-205ENST00000548539 SMIM28A0A1B0GU29 152 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 DHRS7CA6NNS2 312 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 PP2D1A8MPX8 630 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 ZNF208O43345 1280 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 N4BP1O75113 896 aaKnown RBP3.07□□□□□ -1.92
VPS29-205ENST00000548539 H2BFMP0C1H6 154 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 ZNF44P15621 663 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 GCKP35557 465 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 OR3A4PP47883 348 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 P2RY1P47900 373 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 RIPK4P57078 832 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 OC90Q02509 493 aaPredicted RBP3.07□□□□□ -1.92
VPS29-205ENST00000548539 MAP2K1Q02750 393 aaPredicted RBP3.07□□□□□ -1.92
VPS29-205ENST00000548539 BCL2L1Q07817 233 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 ZNF239Q16600 458 aaKnown RBP3.07□□□□□ -1.92
VPS29-205ENST00000548539 LRRC23Q53EV4 343 aaPredicted RBP3.07□□□□□ -1.92
VPS29-205ENST00000548539 TPGS2Q68CL5 300 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 ATL3Q6DD88 541 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 OR5M10Q6IEU7 315 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 ZSCAN25Q6NSZ9 544 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 PAMR1Q6UXH9 720 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 TMEM110Q86TL2 294 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 TPRA1Q86W33 373 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 ZNF677Q86XU0 584 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 MARCH9Q86YJ5 346 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 CADM2Q8N3J6 435 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 DHRSXQ8N5I4 330 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 PIGCQ92535 297 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 BADQ92934 168 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 EMG1Q92979 244 aaKnown RBP3.07□□□□□ -1.92
VPS29-205ENST00000548539 SLC25A38Q96DW6 304 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 C7orf34Q96L11 122 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 NPAS2Q99743 824 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 CITED1Q99966 193 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 CHIAQ9BZP6 476 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 MAGT1Q9H0U3 335 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 ZNF275Q9NSD4 429 aaPredicted RBP3.07□□□□□ -1.92
VPS29-205ENST00000548539 UFSP2Q9NUQ7 469 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 PIPOXQ9P0Z9 390 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 ANGPTL2Q9UKU9 493 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 FLVCR1Q9Y5Y0 555 aa3.07□□□□□ -1.92
VPS29-205ENST00000548539 DDX49Q9Y6V7 483 aaKnown RBP3.07□□□□□ -1.92
VPS29-205ENST00000548539 IGLV8-61A0A075B6I0 122 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 IGHV2-70DA0A0C4DH43 119 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 A0A1W2PNV4 684 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 ZNF705EA8MWA4 302 aaPredicted RBP3.06□□□□□ -1.92
VPS29-205ENST00000548539 NPIPA7E9PJI5 369 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 K7ENP7 123 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 RS1O15537 224 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 IL1BP01584 269 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 OR8U8P0C7N1 319 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 NPIPA8P0DM63 369 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 PNMTP11086 282 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 NCK1P16333 377 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 POLR2EP19388 210 aaKnown RBP3.06□□□□□ -1.92
VPS29-205ENST00000548539 CYP2B6P20813 491 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 MMP11P24347 488 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 HMGB2P26583 209 aaKnown RBP3.06□□□□□ -1.92
VPS29-205ENST00000548539 CD80P33681 288 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 UGT1A3P35503 534 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 AIF1P55008 147 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 CSTF1Q05048 431 aaKnown RBP3.06□□□□□ -1.92
VPS29-205ENST00000548539 PTCH1Q13635 1447 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 ELAVL3Q14576 367 aaKnown RBP3.06□□□□□ -1.92
VPS29-205ENST00000548539 TRIM16LQ309B1 348 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 SLC25A52Q3SY17 297 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 PAGE2BQ5JRK9 111 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 ZNF658Q5TYW1 1059 aaPredicted RBP3.06□□□□□ -1.92
VPS29-205ENST00000548539 LIPNQ5VXI9 398 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 KRTAP5-5Q701N2 237 aaPredicted RBP3.06□□□□□ -1.92
VPS29-205ENST00000548539 ZNF679Q8IYX0 411 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 GPD1LQ8N335 351 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 ZCCHC7Q8N3Z6 543 aaKnown RBP3.06□□□□□ -1.92
VPS29-205ENST00000548539 OR10A7Q8NGE5 316 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 OR4D9Q8NGE8 314 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 OR2A12Q8NGT7 310 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 MRAPQ8TCY5 172 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 ZNF606Q8WXB4 792 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 HAVCR1Q96D42 359 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 MCHR1Q99705 422 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 CCT7Q99832 543 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 PAXXQ9BUH6 204 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 NT5C3AQ9H0P0 336 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 RHBGQ9H310 441 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 APMAPQ9HDC9 416 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 FANCFQ9NPI8 374 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 NANSQ9NR45 359 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 OR1A1Q9P1Q5 309 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 NPIPA1Q9UND3 350 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 SCML2Q9UQR0 700 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 VSIG4Q9Y279 399 aa3.06□□□□□ -1.92
VPS29-205ENST00000548539 AK6Q9Y3D8 172 aaKnown RBP3.06□□□□□ -1.92
VPS29-205ENST00000548539 SULT2B1O00204 365 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 PRKYO43930 277 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 CABYRO75952 493 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 GNA14O95837 355 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 HOXD10P28358 340 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 PRKAR2BP31323 418 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 LEPP41159 167 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms