RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 LY6G5CQ5SRR4 150 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 MLIPQ5VWP3 458 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 ALG1LQ6GMV1 187 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 HEPHL1Q6MZM0 1159 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 LRRTM4Q86VH4 590 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 ABHD4Q8TB40 342 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 C15orf40Q8WUR7 153 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 B3GAT2Q9NPZ5 323 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 DUXAA6NLW8 204 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 D6RAR5 112 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 RAD1O60671 282 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 CYB5AP00167 134 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 APEHP13798 732 aaKnown RBP13.32□□□□□ -0.28
LIMS1-215ENST00000544547 PUM1Q14671 1186 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIMS1-215ENST00000544547 CCSMST1Q4G0I0 132 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 UNQ6126/PRO20091Q6UXV3 157 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 CLRN3Q8NCR9 226 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 SMAP2Q8WU79 429 aaPredicted RBP13.32□□□□□ -0.28
LIMS1-215ENST00000544547 SLC22A18Q96BI1 424 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 MACROD1Q9BQ69 325 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 SLC6A20Q9NP91 592 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF175Q9Y473 711 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 LCMT2O60294 686 aaKnown RBP13.32□□□□□ -0.28
LIMS1-215ENST00000544547 SNAPC5O75971 98 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 HMGN2P05204 90 aaKnown RBP13.32□□□□□ -0.28
LIMS1-215ENST00000544547 PDHA2P29803 388 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 TIAL1Q01085 375 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIMS1-215ENST00000544547 AMZ1Q400G9 498 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 BAIAP2L2Q6UXY1 529 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 ZER1Q7Z7L7 766 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 L3MBTL4Q8NA19 623 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 RAB11FIP5Q9BXF6 653 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 USP36Q9P275 1121 aaKnown RBP13.32□□□□□ -0.28
LIMS1-215ENST00000544547 MED16Q9Y2X0 877 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 TYRP14679 529 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 AKR1C4P17516 323 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 CD34P28906 385 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TRIM23P36406 574 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 ZFP36L2P47974 494 aaKnown RBP13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TCTN3Q6NUS6 607 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TMEM65Q6PI78 240 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 NUP43Q8NFH3 380 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SMPDL3BQ92485 455 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TTC9Q92623 222 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 ARL11Q969Q4 196 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SLC41A3Q96GZ6 507 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 POTEKPQ9BYX7 375 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 ASIC5Q9NY37 505 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 IL36AQ9UHA7 158 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SLC7A7Q9UM01 511 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 COL11A2P13942 1736 aaPredicted RBP13.31□□□□□ -0.28
LIMS1-215ENST00000544547 E9PI62 339 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SLC16A5O15375 505 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 PPP1R3DO95685 299 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TACSTD2P09758 323 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 ADH5P11766 374 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 RAB2AP61019 212 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SEC61A1P61619 476 aaKnown RBP13.31□□□□□ -0.28
LIMS1-215ENST00000544547 GAS6Q14393 721 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 PGGHGQ32M88 737 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SFRP5Q5T4F7 317 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 NXPE4Q6UWF7 544 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 VRK2Q86Y07 508 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 CMIPQ8IY22 773 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 P2RY12Q9H244 342 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 DMRT3Q9NQL9 472 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TMEM150CB9EJG8 249 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SIGLEC5O15389 551 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 RRASP10301 218 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 PGAM2P15259 253 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 CD70P32970 193 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SLC6A11P48066 632 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 MTNR1BP49286 362 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SIGLEC14Q08ET2 396 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 ST3GAL2Q16842 350 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TSSK4Q6SA08 328 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TMCO2Q7Z6W1 182 aaPredicted RBP13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SLC9B2Q86UD5 537 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 MCEMP1Q8IX19 187 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 LILRA3Q8N6C8 439 aaPredicted RBP13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TTLQ8NG68 377 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 NSMAFQ92636 917 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 C3orf49Q96BT1 292 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 CXorf58Q96LI9 332 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 PRRC1Q96M27 445 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SDHCQ99643 169 aaPredicted RBP13.31□□□□□ -0.28
LIMS1-215ENST00000544547 AUNIPQ9H7T9 357 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 LIN7BQ9HAP6 207 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 BRF2Q9HAW0 419 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 CYB5R1Q9UHQ9 305 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 PRELID3BQ9Y3B1 194 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 INSL5Q9Y5Q6 135 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 TMEM129A0AVI4 362 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SLC2A10O95528 541 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 SPINT3P49223 89 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 EIPR1Q53HC9 387 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 EIF5AL1Q6IS14 154 aaKnown RBP13.31□□□□□ -0.28
LIMS1-215ENST00000544547 C22orf39Q6P5X5 142 aa13.31□□□□□ -0.28
LIMS1-215ENST00000544547 GRASPQ7Z6J2 395 aaPredicted RBP13.31□□□□□ -0.28
LIMS1-215ENST00000544547 OR6V1Q8N148 313 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms