RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 QPRTQ15274 297 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 PDCD2Q16342 344 aaPredicted RBP11.7□□□□□ -0.54
RTN3-213ENST00000543552 DPY19L1Q2PZI1 675 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 TMEM176BQ3YBM2 270 aaPredicted RBP11.7□□□□□ -0.54
RTN3-213ENST00000543552 SLC25A53Q5H9E4 307 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.7□□□□□ -0.54
RTN3-213ENST00000543552 ANXA8L1Q5VT79 327 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 EIF3MQ7L2H7 374 aaKnown RBP11.7□□□□□ -0.54
RTN3-213ENST00000543552 SSX8Q7RTT4 187 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 C6orf120Q7Z4R8 191 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 YTHDF3Q7Z739 585 aaKnown RBP11.7□□□□□ -0.54
RTN3-213ENST00000543552 LRRC34Q8IZ02 419 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 MREGQ8N565 214 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 OR8J2Q8NGG1 315 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 OR5D16Q8NGK9 328 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 RFWD2Q8NHY2 731 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 GPR119Q8TDV5 335 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 ABHD3Q8WU67 409 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 TMEM234Q8WY98 164 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 ROBO4Q8WZ75 1007 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 ST8SIA1Q92185 356 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 PLPPR2Q96GM1 343 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 SDF2Q99470 211 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 DPY30Q9C005 99 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 SSU72Q9NP77 194 aaKnown RBP11.7□□□□□ -0.54
RTN3-213ENST00000543552 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.7□□□□□ -0.54
RTN3-213ENST00000543552 RAP2CQ9Y3L5 183 aa11.7□□□□□ -0.54
RTN3-213ENST00000543552 SPIN1Q9Y657 262 aaPredicted RBP11.7□□□□□ -0.54
RTN3-213ENST00000543552 ETV2O00321 342 aaPredicted RBP11.69□□□□□ -0.54
RTN3-213ENST00000543552 KLF4O43474 513 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 OIP5O43482 229 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 NTN1O95631 604 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 CSTAP01040 98 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 HEXAP06865 529 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 PGCP20142 388 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 LOXP28300 417 aaPredicted RBP11.69□□□□□ -0.54
RTN3-213ENST00000543552 SHC1P29353 583 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 CLNS1AP54105 237 aaKnown RBP11.69□□□□□ -0.54
RTN3-213ENST00000543552 RAC3P60763 192 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 ABCE1P61221 599 aaKnown RBP11.69□□□□□ -0.54
RTN3-213ENST00000543552 HPCAP84074 193 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 GPR68Q15743 365 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 CHI3L2Q15782 390 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 ZNF141Q15928 474 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 ARHGAP11BQ3KRB8 267 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 PDZK1Q5T2W1 519 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 TFAP2EQ6VUC0 442 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 GABRG1Q8N1C3 465 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 ATP6V1C2Q8NEY4 427 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 OR4A15Q8NGL6 344 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 MIPOL1Q8TD10 442 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 SLC25A43Q8WUT9 341 aaPredicted RBP11.69□□□□□ -0.54
RTN3-213ENST00000543552 KISS1RQ969F8 398 aaPredicted RBP11.69□□□□□ -0.54
RTN3-213ENST00000543552 S100PBPQ96BU1 408 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 COX4I2Q96KJ9 171 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 Q96MF0 132 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 SRXN1Q9BYN0 137 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 LAT2Q9GZY6 243 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 ESRP2Q9H6T0 727 aaKnown RBP11.69□□□□□ -0.54
RTN3-213ENST00000543552 AKTIPQ9H8T0 292 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 POLE3Q9NRF9 147 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 SLC35A3Q9Y2D2 325 aa11.69□□□□□ -0.54
RTN3-213ENST00000543552 HS3ST1O14792 307 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 CYP7B1O75881 506 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 FESP07332 822 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 GUSBP08236 651 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 NID1P14543 1247 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 PAX1P15863 534 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 CREB1P16220 341 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 ENPP1P22413 925 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 PTH2RP49190 550 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 KHKP50053 298 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 RNF144AP50876 292 aaPredicted RBP11.68□□□□□ -0.54
RTN3-213ENST00000543552 RPL14P50914 215 aaKnown RBP11.68□□□□□ -0.54
RTN3-213ENST00000543552 RPS26P62854 115 aaKnown RBP11.68□□□□□ -0.54
RTN3-213ENST00000543552 CSNK2A1P68400 391 aaPredicted RBP11.68□□□□□ -0.54
RTN3-213ENST00000543552 SKP2Q13309 424 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 TOMM34Q15785 309 aaPredicted RBP11.68□□□□□ -0.54
RTN3-213ENST00000543552 NDUFAF6Q330K2 333 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 SFRP5Q5T4F7 317 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 OR4F3Q6IEY1 312 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 C22orf34Q6ZV56 151 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 CROCCP2Q86T23 111 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 TUSC5Q8IXB3 177 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 ZNF611Q8N823 705 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 ZNF781Q8N8C0 355 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 HSD17B8Q92506 261 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 TESCQ96BS2 214 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 PKNOX2Q96KN3 472 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 KLHDC3Q9BQ90 382 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 TMEM204Q9BSN7 226 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 POTEKPQ9BYX7 375 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 ZNF350Q9GZX5 532 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 COQ10BQ9H8M1 238 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 BCO1Q9HAY6 547 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 RNF115Q9Y4L5 304 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 KCNE3Q9Y6H6 103 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 DSCAMO60469 2012 aa11.68□□□□□ -0.54
RTN3-213ENST00000543552 RAI1Q7Z5J4 1906 aaPredicted RBP11.67□□□□□ -0.54
RTN3-213ENST00000543552 PRSS51A0A1B0GVH4 220 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms