RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SLC30A6Q6NXT4 461 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 ULK3Q6PHR2 472 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 XKRXQ6PP77 449 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 RTL4Q6ZR62 310 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 PRSS41Q7RTY9 318 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 DGLUCYQ7Z3D6 616 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 SNX29P2Q8IUI4 249 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 ACBD7Q8N6N7 88 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 ARIH2OSQ8N7S6 290 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 DNAJA4Q8WW22 397 aaPredicted RBP9.12□□□□□ -0.95
SS18-205ENST00000542420 TM9SF4Q92544 642 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 RIT1Q92963 219 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 BPIFA2Q96DR5 249 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 DGAT2Q96PD7 388 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 KCNN2Q9H2S1 579 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 C12orf10Q9HB07 376 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 HINT3Q9NQE9 182 aaKnown RBP9.12□□□□□ -0.95
SS18-205ENST00000542420 EXOSC3Q9NQT5 275 aaKnown RBP9.12□□□□□ -0.95
SS18-205ENST00000542420 ABCB10Q9NRK6 738 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 DNAJB12Q9NXW2 375 aaKnown RBP9.12□□□□□ -0.95
SS18-205ENST00000542420 SCN2AQ99250 2005 aa9.12□□□□□ -0.95
SS18-205ENST00000542420 CDC42EP2O14613 210 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 FOXS1O43638 330 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 IDH3BO43837 385 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 TMEM127O75204 238 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 HK1P19367 917 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 CD38P28907 300 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 GPR3P46089 330 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 P2RX3P56373 397 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 STX4Q12846 297 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 DNASE1L3Q13609 305 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 CCNJQ5T5M9 372 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 DDI2Q5TDH0 399 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 YOD1Q5VVQ6 348 aaPredicted RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 ZNF322Q6U7Q0 402 aaPredicted RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 BCDIN3DQ7Z5W3 292 aaKnown RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 ARL14Q8N4G2 192 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 POC5Q8NA72 575 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 OR5T3Q8NGG3 340 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 ASB15Q8WXK1 588 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 KCTD12Q96CX2 325 aaKnown RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 MRPL48Q96GC5 212 aaKnown RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 RBM18Q96H35 190 aaKnown RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 BARHL1Q9BZE3 327 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 FAM60AQ9NP50 221 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 TMEM74BQ9NUR3 256 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 ZNF229Q9UJW7 825 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 ADAM30Q9UKF2 790 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 V9GYH0 126 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 TDRD6O60522 2096 aaKnown RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 GXYLT2A0PJZ3 443 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 RIIAD1A6NNX1 92 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 PRR23D1E9PI22 279 aaPredicted RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 CDRT1O95170 752 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 MSL3P1P0C860 447 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 PRR23D2P0DMB1 279 aaPredicted RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 PEPDP12955 493 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 ZNF3P17036 446 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 MAKP20794 623 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 SDC2P34741 201 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 ACAA2P42765 397 aaKnown RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 MLLT1Q03111 559 aaPredicted RBP9.11□□□□□ -0.95
SS18-205ENST00000542420 TFF2Q03403 129 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 GALEQ14376 348 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.11□□□□□ -0.95
SS18-205ENST00000542420 LCN1P1Q5VSP4 162 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 MZT2AQ6P582 158 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 PAQR6Q6TCH4 344 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 HMGN2P46Q86SG4 172 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 FAM71CQ8NEG0 241 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 OR9A4Q8NGU2 314 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 HAVCR2Q8TDQ0 301 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 LIPHQ8WWY8 451 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 OR1F2PQ96R84 312 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 PRR14Q9BWN1 585 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 SEMA5BQ9P283 1151 aa9.11□□□□□ -0.95
SS18-205ENST00000542420 CENPVL1A0A0U1RR11 272 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 A0A1B0GWA3 101 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 PEX12O00623 359 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 CELA2BP08218 269 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 SLC2A5P22732 501 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 F8A1P23610 371 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 MTNR1BP49286 362 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 FXYD6P3P58550 94 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 HNRNPKP61978 463 aaKnown RBP eCLIP9.1□□□□□ -0.95
SS18-205ENST00000542420 ID2Q02363 134 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 PLAURQ03405 335 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 GGTLC2Q14390 218 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 GRM7Q14831 915 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 EXOSC7Q15024 291 aaKnown RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 GLYR1Q49A26 553 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 SLC35D3Q5M8T2 416 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 CLEC12AQ5QGZ9 265 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 WDR88Q6ZMY6 472 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 CPOQ8IVL8 374 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 TEX19Q8NA77 164 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 POMGNT2Q8NAT1 580 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 ANGPTL6Q8NI99 470 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 TRMT61AQ96FX7 289 aaKnown RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 ZDHHC12Q96GR4 267 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms