RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 EEF1E1O43324 174 aaKnown RBP12.73□□□□□ -0.37
USP28-209ENST00000540925 ADAM11O75078 769 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 UQCRC1P31930 480 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 AQP5P55064 265 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 RPS3AP61247 264 aaKnown RBP12.73□□□□□ -0.37
USP28-209ENST00000540925 CHRNEQ04844 493 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 SNTB1Q13884 538 aaKnown RBP12.73□□□□□ -0.37
USP28-209ENST00000540925 SYPL1Q16563 259 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 GTDC1Q4AE62 458 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 VWA1Q6PCB0 445 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 BLOC1S3Q6QNY0 202 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 LRRC74BQ6ZQY2 392 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 EIF3MQ7L2H7 374 aaKnown RBP12.73□□□□□ -0.37
USP28-209ENST00000540925 LILRA2Q8N149 483 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 ZNF614Q8N883 585 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 OR2V1Q8NHB1 315 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 FBXO27Q8NI29 283 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 DYDC1Q8WWB3 177 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 SMPDL3BQ92485 455 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 ITCHQ96J02 903 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 PAIP1Q9H074 479 aaKnown RBP12.73□□□□□ -0.37
USP28-209ENST00000540925 ZNF385DQ9H6B1 395 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 EXOSC3Q9NQT5 275 aaKnown RBP12.73□□□□□ -0.37
USP28-209ENST00000540925 PAQR5Q9NXK6 330 aaPredicted RBP12.73□□□□□ -0.37
USP28-209ENST00000540925 CRIM1Q9NZV1 1036 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 PACSIN3Q9UKS6 424 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 GMEB1Q9Y692 573 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 AGAP5A6NIR3 686 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 MSTNO14793 375 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 EDF1O60869 148 aaKnown RBP12.72□□□□□ -0.37
USP28-209ENST00000540925 KRT75O95678 551 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 CSTAP01040 98 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 OPN1LWP04000 364 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 FCGR2AP12318 317 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 CD1EP15812 388 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 CAPN3P20807 821 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 KIR2DL3P43628 341 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 EIF1AXP47813 144 aaKnown RBP12.72□□□□□ -0.37
USP28-209ENST00000540925 ATP4BP51164 291 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 IRX1P78414 480 aaPredicted RBP12.72□□□□□ -0.37
USP28-209ENST00000540925 CBFBQ13951 182 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 QPRTQ15274 297 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 DNAJC14Q6Y2X3 702 aaPredicted RBP12.72□□□□□ -0.37
USP28-209ENST00000540925 CHMP1BQ7LBR1 199 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 P4HA3Q7Z4N8 544 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 BTLAQ7Z6A9 289 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 MSRB3Q8IXL7 192 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 PNPT1Q8TCS8 783 aaKnown RBP12.72□□□□□ -0.37
USP28-209ENST00000540925 FAM222BQ8WU58 562 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 ST8SIA1Q92185 356 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 PMM1Q92871 262 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 LRRC46Q96FV0 321 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 KLHL15Q96M94 604 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 QRSL1Q9H0R6 528 aaKnown RBP12.72□□□□□ -0.37
USP28-209ENST00000540925 TMEM185BQ9H7F4 350 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 RMND5AQ9H871 391 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 COQ10BQ9H8M1 238 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 TPT1P8Q9HAU6 139 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 GALNT8Q9NY28 637 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 SLC35A3Q9Y2D2 325 aa12.72□□□□□ -0.37
USP28-209ENST00000540925 TRBV5-3A0A0A0MS03 114 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 CLDN24A6NM45 220 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 TNFSF11O14788 317 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 CXCL13O43927 109 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 SS18L1O75177 396 aaPredicted RBP12.71□□□□□ -0.37
USP28-209ENST00000540925 CTAG2O75638 210 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 TFPTP0C1Z6 253 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 UBTFL6P0CB48 400 aaPredicted RBP12.71□□□□□ -0.37
USP28-209ENST00000540925 CD8BP10966 210 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 BMP2P12643 396 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 ETFAP13804 333 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 ME2P23368 584 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 KCNJ10P78508 379 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 SELENBP1Q13228 472 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 DAZAP2Q15038 168 aaPredicted RBP12.71□□□□□ -0.37
USP28-209ENST00000540925 GPAT3Q53EU6 434 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 LRIF1Q5T3J3 769 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 SLC2A7Q6PXP3 512 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 FAM214BQ7L5A3 538 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 KIF18BQ86Y91 864 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 CMIPQ8IY22 773 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 ZZZ3Q8IYH5 903 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 AURKBQ96GD4 344 aaPredicted RBP12.71□□□□□ -0.37
USP28-209ENST00000540925 ZNF559Q9BR84 538 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 THUMPD3Q9BV44 507 aaKnown RBP12.71□□□□□ -0.37
USP28-209ENST00000540925 RBM24Q9BX46 236 aaKnown RBP12.71□□□□□ -0.37
USP28-209ENST00000540925 MTHFD2LQ9H903 347 aaPredicted RBP12.71□□□□□ -0.37
USP28-209ENST00000540925 ACER3Q9NUN7 267 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 SLC25A37Q9NYZ2 338 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 PCDHB14Q9Y5E9 798 aa12.71□□□□□ -0.37
USP28-209ENST00000540925 SPG11Q96JI7 2443 aa12.71□□□□□ -0.38
USP28-209ENST00000540925 F8P00451 2351 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 A0A096LPI6 279 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 NUDT14O95848 222 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 ANXA11P50995 505 aaKnown RBP12.7□□□□□ -0.38
USP28-209ENST00000540925 SESN3P58005 492 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 STX1BP61266 288 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 MYBPHQ13203 477 aa12.7□□□□□ -0.38
USP28-209ENST00000540925 ZNF239Q16600 458 aaKnown RBP12.7□□□□□ -0.38
USP28-209ENST00000540925 HBMQ6B0K9 141 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms