RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CNOT4O95628 575 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 EPPINO95925 133 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 C1QCP02747 245 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 NUDT7P0C024 238 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 BMP7P18075 431 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 DRD5P21918 477 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 IL12BP29460 328 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 TIMP3P35625 211 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 SOX18P35713 384 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 SOX3P41225 446 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 MVDP53602 400 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 CORO7P57737 925 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 PSPHP78330 225 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 CDK6Q00534 326 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 PLCXD2Q0VAA5 305 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 VMACQ2NL98 169 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 PIGGQ5H8A4 983 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 DCST2Q5T1A1 773 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 ASRGL1Q7L266 308 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 NFKBIDQ8NI38 313 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 NUBPLQ8TB37 319 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 SLC26A7Q8TE54 656 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 FIG4Q92562 907 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 PIGTQ969N2 578 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 FAM162AQ96A26 154 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 TP53INP1Q96A56 240 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 HSPBAP1Q96EW2 488 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 SLC35A4Q96G79 324 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 ZNF583Q96ND8 569 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 DACH2Q96NX9 599 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 G6PC3Q9BUM1 346 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 BTBD2Q9BX70 525 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 TRIM15Q9C019 465 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 TMEM38AQ9H6F2 299 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 HPF1Q9NWY4 346 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 GIN1Q9NXP7 522 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 TUBA8Q9NY65 449 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 TENM1Q9UKZ4 2725 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 CR1P17927 2039 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 USF3Q68DE3 2245 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 GXYLT2A0PJZ3 443 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 PRORSD1PA6NEY8 169 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 WWP2O00308 870 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 ACOX3O15254 700 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 ZNF354AO60765 605 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 TNFRSF21O75509 655 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 REM1O75628 298 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 ARAFP10398 606 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 BMP2P12643 396 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 HSD17B1P14061 328 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 DNASE1L1P49184 302 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 TMED10P49755 219 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 MRPS22P82650 360 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 PSG6Q00889 435 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 CEACAM7Q14002 265 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 REEP3Q6NUK4 255 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 PODNL1Q6PEZ8 512 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 FIGNL1Q6PIW4 674 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 KRT73Q86Y46 540 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 METTL25Q8N6Q8 603 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 FAM156AQ8NDB6 213 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 HIPK4Q8NE63 616 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 C17orf47Q8NEP4 570 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 BBS10Q8TAM1 723 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 MAL2Q969L2 176 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 ADIPOR1Q96A54 375 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 TMEM19Q96HH6 336 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 BTBD9Q96Q07 612 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 RASL10BQ96S79 203 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 NXF5Q9H1B4 397 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 MUC13Q9H3R2 512 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 A4GALTQ9NPC4 353 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 MYOTQ9UBF9 498 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 EGFL7Q9UHF1 273 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 MAGEL2Q9UJ55 1249 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 GPR55Q9Y2T6 319 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 WDR45Q9Y484 360 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 SNX13Q9Y5W8 968 aa11.31□□□□□ -0.6
CLSTN3-208ENST00000538933 EXPH5Q8NEV8 1989 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 CXCR6O00574 342 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 STX11O75558 287 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 IFNA14P01570 189 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 RFPL3SP0C7P2 107 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 CT45A8P0DMV1 189 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 CT45A9P0DMV2 189 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 HPGDP15428 266 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 NQO1P15559 274 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 AQP1P29972 269 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 PCGF2P35227 344 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 MSX2P35548 267 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 KCNJ2P63252 427 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 TRIM25Q14258 630 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 GPR68Q15743 365 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 SYPL1Q16563 259 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 ARHGAP11BQ3KRB8 267 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 CYP27C1Q4G0S4 372 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 ACSF3Q4G176 576 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 LRRC23Q53EV4 343 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 CT45A2Q5DJT8 189 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms