RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 SMU1Q2TAY7 513 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 CFAP157Q5JU67 520 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 C11orf71Q6IPW1 123 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 WFDC8Q8IUA0 241 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 C17orf53Q8N3J3 647 aaPredicted RBP9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 FAM71CQ8NEG0 241 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 OR5W2Q8NH69 310 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 MIPOL1Q8TD10 442 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 ZIM3Q96PE6 472 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 AMBRA1Q9C0C7 1298 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 EQTNQ9NQ60 294 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 MID2Q9UJV3 735 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 MGAT4BQ9UQ53 548 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 LIPT1Q9Y234 373 aa9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 MAGED1Q9Y5V3 778 aaPredicted RBP9.93□□□□□ -0.82
CLSTN3-206ENST00000535668 ANK2Q01484 3957 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 A0A1W2PPM1 405 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 OR5H1A6NKK0 313 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 DUXAA6NLW8 204 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 RNF223E7ERA6 249 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 PDLIM1O00151 329 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 SCAMP2O15127 329 aaKnown RBP9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 NPHS1O60500 1241 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 TRIM13O60858 407 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 CHEK2O96017 543 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 ENPP1P22413 925 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 IL32P24001 234 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 MAPK1P28482 360 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 MAP2K6P52564 334 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 H3F3AP84243 136 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 BSPH1Q075Z2 132 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 LOXL1Q08397 574 aaPredicted RBP9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 FOXF1Q12946 379 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 TMEM176BQ3YBM2 270 aaPredicted RBP9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 ABLIM2Q6H8Q1 611 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 BHLHB9Q6PI77 547 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 BANPQ8N9N5 519 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 FBXO27Q8NI29 283 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 SLC25A43Q8WUT9 341 aaPredicted RBP9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 ZNF524Q96C55 264 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 MUS81Q96NY9 551 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 GATA5Q9BWX5 397 aaPredicted RBP9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 LAT2Q9GZY6 243 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 SAP130Q9H0E3 1048 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 CXorf36Q9H7Y0 433 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 ZCCHC3Q9NUD5 404 aaKnown RBP9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 ATAD3AQ9NVI7 634 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 ASIC5Q9NY37 505 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 SH3BP4Q9P0V3 963 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 MALT1Q9UDY8 824 aa9.92□□□□□ -0.82
CLSTN3-206ENST00000535668 H7C417 338 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 SMAD9O15198 467 aaKnown RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 ZNF264O43296 627 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 F12P00748 615 aaPredicted RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 ADAP00813 363 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 PRPS1L1P21108 318 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 PAX7P23759 505 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 PTAFRP25105 342 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 RFX3P48380 749 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 CCT3P49368 545 aaKnown RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 VLDLRP98155 873 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 SKP2Q13309 424 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 LASP1Q14847 261 aaKnown RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 PCLAFQ15004 111 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 LSM12Q3MHD2 195 aaKnown RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 DCST2Q5T1A1 773 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 CLEC6AQ6EIG7 209 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 C3orf33Q6P1S2 294 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 TMPPEQ6ZT21 453 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 BHLHA15Q7RTS1 189 aaPredicted RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 MTDHQ86UE4 582 aaKnown RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 ZNF433Q8N7K0 673 aaPredicted RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 CDC26Q8NHZ8 85 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 KIF18AQ8NI77 898 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 PHOSPHO1Q8TCT1 267 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 ARL8AQ96BM9 186 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 PPP3R2Q96LZ3 170 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 TSSK3Q96PN8 268 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 SDF2Q99470 211 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 BHLHE41Q9C0J9 482 aaPredicted RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 PIF1Q9H611 641 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 POLE3Q9NRF9 147 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 CISD1Q9NZ45 108 aaKnown RBP9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 BAIAP2L1Q9UHR4 511 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 TRAF6Q9Y4K3 522 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 ARFGEF3Q5TH69 2177 aa9.91□□□□□ -0.82
CLSTN3-206ENST00000535668 A0A1W2PP18 115 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 ZNF716A6NP11 495 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 OIP5O43482 229 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 CRCPO75575 148 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 FAM153BP0C7A2 387 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 FAM157CP0CG43 387 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 LAMP1P11279 417 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 ATP6V1C1P21283 382 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 TTKP33981 857 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 ACVR1BP36896 505 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 HPCAL1P37235 193 aa9.9□□□□□ -0.82
CLSTN3-206ENST00000535668 PRKAG1P54619 331 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms