RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SERINC4A6NH21 518 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 TMCC2O75069 709 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 STX11O75558 287 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 CNOT4O95628 575 aaKnown RBP13.12□□□□□ -0.31
VPS28-215ENST00000531924 PLAUP00749 431 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 ADAP00813 363 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 CD3EP07766 207 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 ENPP1P22413 925 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 RPS26P62854 115 aaKnown RBP13.12□□□□□ -0.31
VPS28-215ENST00000531924 HBA1P69905 142 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 PPP2R2BQ00005 443 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 EMX2Q04743 252 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 P2RY6Q15077 328 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 QPRTQ15274 297 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 TOMM34Q15785 309 aaPredicted RBP13.12□□□□□ -0.31
VPS28-215ENST00000531924 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.12□□□□□ -0.31
VPS28-215ENST00000531924 PDZK1Q5T2W1 519 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 SFRP5Q5T4F7 317 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 ATAD3BQ5T9A4 648 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 TFAP2EQ6VUC0 442 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 NUFIP2Q7Z417 695 aaKnown RBP13.12□□□□□ -0.31
VPS28-215ENST00000531924 C6orf120Q7Z4R8 191 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 ZNF619Q8N2I2 560 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 ZNF611Q8N823 705 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 VPS37AQ8NEZ2 397 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 OR4A15Q8NGL6 344 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 TMEM234Q8WY98 164 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 SLC35G5Q96KT7 338 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 PPP1R36Q96LQ0 422 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 OR5B2Q96R09 309 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 SDF2Q99470 211 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 ANKZF1Q9H8Y5 726 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 RNF115Q9Y4L5 304 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 VPS13CQ709C8 3753 aa13.12□□□□□ -0.31
VPS28-215ENST00000531924 ABCA2Q9BZC7 2435 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 IGHV3-15A0A0B4J1V0 119 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 RNF103-CHMP3A0A140T963 221 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 WDR91A4D1P6 747 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 EFNA2O43921 213 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 NTN1O95631 604 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 AGR2O95994 175 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 CSTAP01040 98 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 FESP07332 822 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 PCSK6P29122 969 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 CLDN8P56748 225 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 RAC3P60763 192 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 RPS4XP62701 263 aaKnown RBP13.11□□□□□ -0.31
VPS28-215ENST00000531924 VSNL1P62760 191 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 TSC22D1Q15714 1073 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 PDCD2Q16342 344 aaPredicted RBP13.11□□□□□ -0.31
VPS28-215ENST00000531924 C3orf33Q6P1S2 294 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 EIF3MQ7L2H7 374 aaKnown RBP13.11□□□□□ -0.31
VPS28-215ENST00000531924 RIMKLAQ8IXN7 391 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 GABRG1Q8N1C3 465 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 GTPBP3Q969Y2 492 aaKnown RBP13.11□□□□□ -0.31
VPS28-215ENST00000531924 ARSGQ96EG1 525 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 THUMPD3Q9BV44 507 aaKnown RBP13.11□□□□□ -0.31
VPS28-215ENST00000531924 DPY30Q9C005 99 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 NMUR2Q9GZQ4 415 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 LAMP3Q9UQV4 416 aa13.11□□□□□ -0.31
VPS28-215ENST00000531924 PCNX3Q9H6A9 2034 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 A0A1W2PNR3 127 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 NPIPB9F8W1W9 429 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 MYZAPP0CAP1 466 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 UBTFL6P0CB48 400 aaPredicted RBP13.1□□□□□ -0.31
VPS28-215ENST00000531924 TFPIP10646 304 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 PGCP20142 388 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 ZNF844Q08AG5 666 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 RASGEF1BQ0VAM2 473 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 MERTKQ12866 999 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 ITGADQ13349 1161 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 STK11Q15831 433 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 SMU1Q2TAY7 513 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 TIGD2Q4W5G0 525 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 ANXA8L1Q5VT79 327 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 OR4F3Q6IEY1 312 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 EMBQ6PCB8 327 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 BHLHA15Q7RTS1 189 aaPredicted RBP13.1□□□□□ -0.31
VPS28-215ENST00000531924 ZNF100Q8IYN0 542 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 CLECL1Q8IZS7 167 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 ST8SIA1Q92185 356 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 FBXW5Q969U6 566 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 MUCL1Q96DR8 90 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 TRMT61AQ96FX7 289 aaKnown RBP13.1□□□□□ -0.31
VPS28-215ENST00000531924 ZIM3Q96PE6 472 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 TMEM204Q9BSN7 226 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 POTEKPQ9BYX7 375 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 LAT2Q9GZY6 243 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 ZNF701Q9NV72 531 aaPredicted RBP13.1□□□□□ -0.31
VPS28-215ENST00000531924 MKLN1Q9UL63 735 aa13.1□□□□□ -0.31
VPS28-215ENST00000531924 SPIN1Q9Y657 262 aaPredicted RBP13.1□□□□□ -0.31
VPS28-215ENST00000531924 C9JVG2 144 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 RNASET2O00584 256 aaKnown RBP13.09□□□□□ -0.31
VPS28-215ENST00000531924 RGS16O15492 202 aaPredicted RBP13.09□□□□□ -0.31
VPS28-215ENST00000531924 GCM2O75603 506 aaPredicted RBP13.09□□□□□ -0.31
VPS28-215ENST00000531924 CPSF4O95639 269 aaKnown RBP13.09□□□□□ -0.31
VPS28-215ENST00000531924 SERPINE1P05121 402 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 CREB1P16220 341 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 ARRB2P32121 409 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 CHI3L1P36222 383 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms