RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NSG1A0A0A6YYJ2 146 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 GTPBP1O00178 669 aaKnown RBP19.43■□□□□ 0.7
VPS28-212ENST00000530836 ICOSLGO75144 302 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 CLK3P49761 638 aaKnown RBP19.43■□□□□ 0.7
VPS28-212ENST00000530836 COPZ1P61923 177 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 IL10RAQ13651 578 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 ZNF691Q5VV52 312 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 KIRREL2Q6UWL6 708 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 MISPQ8IVT2 679 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 OR11G2Q8NGC1 345 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 PIGXQ8TBF5 258 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 GTPBP3Q969Y2 492 aaKnown RBP19.43■□□□□ 0.7
VPS28-212ENST00000530836 MPP4Q96JB8 637 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 HS6ST2Q96MM7 605 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 PITX2Q99697 317 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 USP24Q9UPU5 2620 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 E9PQ18 207 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 SOCS6O14544 535 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 ZNF264O43296 627 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 BCAS1O75363 584 aaPredicted RBP19.42■□□□□ 0.7
VPS28-212ENST00000530836 TTC33Q6PID6 262 aaPredicted RBP19.42■□□□□ 0.7
VPS28-212ENST00000530836 MBOAT2Q6ZWT7 520 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 PHOSPHO1Q8TCT1 267 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 GNPDA2Q8TDQ7 276 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 TTC9Q92623 222 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 TMCO6Q96DC7 493 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 HRASLS5Q96KN8 279 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 TBL1XR1Q9BZK7 514 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 ING2Q9H160 280 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 ZNF696Q9H7X3 374 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 SELENONQ9NZV5 590 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 RPS6KB2Q9UBS0 482 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 MYRFQ9Y2G1 1151 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 GMPPBQ9Y5P6 360 aa19.42■□□□□ 0.7
VPS28-212ENST00000530836 EPG5Q9HCE0 2579 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 A0A0B4J2E0 115 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 A0A1B0GX12 115 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 TMEM200CA6NKL6 621 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 CHP2O43745 196 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 EIF4E2O60573 245 aaKnown RBP19.41■□□□□ 0.7
VPS28-212ENST00000530836 CLIC3O95833 236 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 THY1P04216 161 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 OSMP13725 252 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 POLR2IP36954 125 aaKnown RBP19.41■□□□□ 0.7
VPS28-212ENST00000530836 SLC6A8P48029 635 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 CXADRP78310 365 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 RPP38P78345 283 aaKnown RBP19.41■□□□□ 0.7
VPS28-212ENST00000530836 FOXD4Q12950 439 aaPredicted RBP19.41■□□□□ 0.7
VPS28-212ENST00000530836 ULK3Q6PHR2 472 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 KLHL17Q6TDP4 642 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 NUP54Q7Z3B4 507 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 APLFQ8IW19 511 aaPredicted RBP19.41■□□□□ 0.7
VPS28-212ENST00000530836 ADAMTS17Q8TE56 1095 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 DNAJA4Q8WW22 397 aaPredicted RBP19.41■□□□□ 0.7
VPS28-212ENST00000530836 LAT2Q9GZY6 243 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 HHATLQ9HCP6 504 aa19.41■□□□□ 0.7
VPS28-212ENST00000530836 NDUFB5O43674 189 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 PRKAR1AP10644 381 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 POU2F1P14859 743 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 RBM34P42696 430 aaKnown RBP19.4■□□□□ 0.7
VPS28-212ENST00000530836 MYBPC1Q00872 1141 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 ALDH6A1Q02252 535 aaKnown RBP19.4■□□□□ 0.7
VPS28-212ENST00000530836 CDC20Q12834 499 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 SKP2Q13309 424 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 ZER1Q7Z7L7 766 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 NKAIN4Q8IVV8 208 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 POGLUT1Q8NBL1 392 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 FLRT3Q9NZU0 649 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 NTNG1Q9Y2I2 539 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 WWP2O00308 870 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 NADKO95544 446 aaPredicted RBP19.4■□□□□ 0.7
VPS28-212ENST00000530836 LINGO3P0C6S8 592 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 EVI2BP34910 448 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 RNF144AP50876 292 aaPredicted RBP19.4■□□□□ 0.7
VPS28-212ENST00000530836 NUP107P57740 925 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 CD226Q15762 336 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 ATP1A1-AS1Q5TC04 95 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 PRSS27Q9BQR3 290 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 LIN28AQ9H9Z2 209 aaKnown RBP19.4■□□□□ 0.7
VPS28-212ENST00000530836 ZBTB20Q9HC78 741 aaPredicted RBP19.4■□□□□ 0.7
VPS28-212ENST00000530836 BATF3Q9NR55 127 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 PCDHGB5Q9Y5G0 923 aa19.4■□□□□ 0.7
VPS28-212ENST00000530836 PKD1L2Q7Z442 2459 aa19.39■□□□□ 0.7
VPS28-212ENST00000530836 PTPRQQ9UMZ3 2332 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 A0A1B0GWA3 101 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 FADS1O60427 444 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 HPP00738 406 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 OTX2P32243 289 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 CRISP1P54107 249 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 ISL1P61371 349 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 TSPAN31Q12999 210 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 BLMHQ13867 455 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 WBP2NLQ6ICG8 309 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 C19orf48Q6RUI8 117 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 APOOLQ6UXV4 268 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 PPP1R32Q7Z5V6 425 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 RAB43Q86YS6 212 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 DND1Q8IYX4 353 aaKnown RBP19.39■□□□□ 0.69
VPS28-212ENST00000530836 DEPDC4Q8N2C3 294 aa19.39■□□□□ 0.69
VPS28-212ENST00000530836 THAP3Q8WTV1 239 aaPredicted RBP19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms