RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 DEPDC1BQ8WUY9 529 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 KCTD4Q8WVF5 259 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 CAPSLQ8WWF8 208 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 NELFBQ8WX92 580 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ZNF414Q96IQ9 312 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ELMO2Q96JJ3 720 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ZNF514Q96K75 400 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 ZNF578Q96N58 590 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 ZIM3Q96PE6 472 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 CITED2Q99967 270 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 C17orf62Q9BQA9 187 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ACBD6Q9BR61 282 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 UBAC1Q9BSL1 405 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 NAPBQ9H115 298 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 VCXQ9H320 206 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 C10orf88Q9H8K7 445 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 COPS7BQ9H9Q2 264 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 LMAN1LQ9HAT1 526 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 NMUR1Q9HB89 426 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 C3orf14Q9HBI5 128 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 LZTFL1Q9NQ48 299 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 STMN3Q9NZ72 180 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 TMOD2Q9NZR1 351 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ZNF229Q9UJW7 825 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 APPL1Q9UKG1 709 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 NUP50Q9UKX7 468 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 RUVBL2Q9Y230 463 aaKnown RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 MFHAS1Q9Y4C4 1052 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 NAV1Q8NEY1 1877 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ATRXP46100 2492 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 LRRIQ1Q96JM4 1722 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 SAMD9LQ8IVG5 1584 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 MAP3K1Q13233 1512 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 FAM135AQ9P2D6 1515 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CAMSAP2Q08AD1 1489 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CDK12Q9NYV4 1490 aaPredicted RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 CCDC7Q96M83 1385 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 BRWD3Q6RI45 1802 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 FAM205AQ6ZU69 1335 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 A0A087WV48 116 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 TRGV8A0A0C4DH27 118 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 A0A1W2PNU3 283 aaPredicted RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 A0A1W2PQ72 361 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 OR6C70A6NIJ9 312 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 SLC15A5A6NIM6 579 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 KLLNB2CW77 178 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 ANHXE9PGG2 379 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 F8W036 122 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 PDHXO00330 501 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 B4GAT1O43505 415 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 NUDT21O43809 227 aaKnown RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 BCAS1O75363 584 aaPredicted RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 RHBDL1O75783 438 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 VENTXO95231 258 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 DIRAS3O95661 229 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 RAB3DO95716 219 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 TGM6O95932 706 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 APOC1P02654 83 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CALB1P05937 261 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CAPN1P07384 714 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 STSP08842 583 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 GNAO1P09471 354 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 ANKRD34CP0C6C1 535 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 GHRP10912 638 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 NCF1P14598 390 aaPredicted RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 CD1DP15813 335 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 GOT1P17174 413 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 ADRA2CP18825 462 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 RAB4AP20338 218 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 SERPINB1P30740 379 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 SERPINB5P36952 375 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 TALDO1P37837 337 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 SLC1A4P43007 532 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 SLCO1A2P46721 670 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CSNK1DP48730 415 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CCT3P49368 545 aaKnown RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 EIF2B2P49770 351 aaKnown RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 CLDN8P56748 225 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 RAB4BP61018 213 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 ATP6V0D1P61421 351 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 RAD51Q06609 339 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 GCKRQ14397 625 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 POU6F1Q14863 301 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 PDK1Q15118 436 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 TSC22D1Q15714 1073 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 STXBP2Q15833 593 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 C3AR1Q16581 482 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 TMEM44Q2T9K0 475 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 NKAIN1Q4KMZ8 207 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 HES5Q5TA89 166 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 ATF7IP2Q5U623 682 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 FAM46CQ5VWP2 391 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 LIPNQ5VXI9 398 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CLEC6AQ6EIG7 209 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 OR5M10Q6IEU7 315 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 SCARA5Q6ZMJ2 495 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 C11orf57Q6ZUT1 292 aaPredicted RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 LINC00523Q86TU6 105 aa3.03□□□□□ -1.92
CD44-217ENST00000525348 CDR2LQ86X02 465 aaPredicted RBP3.03□□□□□ -1.92
CD44-217ENST00000525348 PRSS58Q8IYP2 241 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms