RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 BEX3Q00994 111 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 PAX2Q02962 417 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 BEND3Q5T5X7 828 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 SCFD1Q8WVM8 642 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 RBM14Q96PK6 669 aaKnown RBP5.71□□□□□ -1.5
NUP54-215ENST00000514313 MTMR9Q96QG7 549 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 CYP2S1Q96SQ9 504 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 NIPSNAP3BQ9BS92 247 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 ELOVL4Q9GZR5 314 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 MCCC2Q9HCC0 563 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 MIEF1Q9NQG6 463 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 ZNF581Q9P0T4 197 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 SEC14L3Q9UDX4 400 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 CTNNA3Q9UI47 895 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 RIMS3Q9UJD0 308 aa5.71□□□□□ -1.5
NUP54-215ENST00000514313 LOC100131303A0A0U1RQF7 123 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 TIMM8AO60220 97 aaPredicted RBP5.7□□□□□ -1.5
NUP54-215ENST00000514313 TSC22D2O75157 780 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 SLC35E2P0CK97 266 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 HSMCR30P0CW71 290 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 MAGEA9P43362 315 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 STXBP4Q6ZWJ1 553 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 SLC38A2Q96QD8 506 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 TSSK1BQ9BXA7 367 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 PARD6BQ9BYG5 372 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 ROPN1BQ9BZX4 212 aaPredicted RBP5.7□□□□□ -1.5
NUP54-215ENST00000514313 VCPKMTQ9H867 229 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 CAB39LQ9H9S4 337 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 POLE4Q9NR33 117 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 PAK5Q9P286 719 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 SPRR3Q9UBC9 169 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 PDE10AQ9Y233 779 aa5.7□□□□□ -1.5
NUP54-215ENST00000514313 GPX5O75715 221 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 DIRAS1O95057 198 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 TSPAN12O95859 305 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 UQCRFS1P1P0C7P4 283 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 XCR1P46094 333 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 STARP49675 285 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 ZNF772Q68DY9 489 aaPredicted RBP5.69□□□□□ -1.5
NUP54-215ENST00000514313 DHDDSQ86SQ9 333 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 SLC35F2Q8IXU6 374 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 GPR65Q8IYL9 337 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 ATP6V0D2Q8N8Y2 350 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 TPD52L3Q96J77 140 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 CUTCQ9NTM9 273 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 ANGPTL2Q9UKU9 493 aa5.69□□□□□ -1.5
NUP54-215ENST00000514313 A0A0U1RQS6 177 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 A0A1B0GVL5 298 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 FAM240BA0A1B0GVZ2 78 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 BTBD17A6NE02 478 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 FAM47DPA6NHR8 397 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 VSTM2BA6NLU5 285 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 F5H6K3 240 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 HMGB2P26583 209 aaKnown RBP5.68□□□□□ -1.5
NUP54-215ENST00000514313 ATP1B3P54709 279 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 KLRC3Q07444 240 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 BST1Q10588 318 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 SERTAD2Q14140 314 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 UQCC3Q6UW78 93 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 VITQ6UXI7 678 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 TRPM8Q7Z2W7 1104 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 MAPK1IP1LQ8NDC0 245 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 CATSPER1Q8NEC5 780 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 C10orf35Q96D05 121 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 COPS8Q99627 209 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 MCHR1Q99705 422 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 SLC39A3Q9BRY0 314 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 SLC35A5Q9BS91 424 aa5.68□□□□□ -1.5
NUP54-215ENST00000514313 PNPLA6Q8IY17 1366 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 CTAGE15A4D2H0 777 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 OR52A4PA6NMU1 304 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 K7ENP7 123 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 CDX4O14627 284 aaPredicted RBP5.67□□□□□ -1.5
NUP54-215ENST00000514313 PRKYO43930 277 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 UGT2B17O75795 530 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 IGHG4P01861 327 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 POLR2EP19388 210 aaKnown RBP5.67□□□□□ -1.5
NUP54-215ENST00000514313 GCAP28676 217 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 RPL13AP40429 203 aaKnown RBP5.67□□□□□ -1.5
NUP54-215ENST00000514313 LEPP41159 167 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 HLCSP50747 726 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 PRKXP51817 358 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 KLRB1Q12918 225 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 CUL2Q13617 745 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 TRIM16LQ309B1 348 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 GLYR1Q49A26 553 aaPredicted RBP5.67□□□□□ -1.5
NUP54-215ENST00000514313 LIPNQ5VXI9 398 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 ATL3Q6DD88 541 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 CTAGE6Q86UF2 777 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 CCDC50Q8IVM0 306 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 UBE2J2Q8N2K1 259 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 OR2L13Q8N349 312 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 OR1L4Q8NGR5 311 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 CCDC26Q8TAB7 109 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 MAIP1Q8WWC4 291 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 FAF2Q96CS3 445 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 NOL4LQ96MY1 436 aaPredicted RBP5.67□□□□□ -1.5
NUP54-215ENST00000514313 CCT8L2Q96SF2 557 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 CCDC77Q9BR77 488 aa5.67□□□□□ -1.5
NUP54-215ENST00000514313 DPH7Q9BTV6 452 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms