RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TECPR1Q7Z6L1 1165 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 GLCCI1Q86VQ1 547 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 SPAG16Q8N0X2 631 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 METTL27Q8N6F8 245 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 SPERTQ8NA61 448 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 OR2L8Q8NGY9 312 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 SYNPRQ8TBG9 265 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 BRIX1Q8TDN6 353 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 CNOT9Q92600 299 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 OR8D2Q9GZM6 311 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ANKRD19PQ9H560 264 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 PLEKHA1Q9HB21 404 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 NOX3Q9HBY0 568 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 NUP50Q9UKX7 468 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ARID2Q68CP9 1835 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 TRAV18A0A075B6X5 111 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 CDHR4A6H8M9 788 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 DISC1C4P0D8 188 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 UBL3O95164 117 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 CYB5AP00167 134 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 SOX18P35713 384 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 BMPR1AP36894 532 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 CRYBB2P43320 205 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 BLKP51451 505 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 CTXN1P60606 82 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 GFOD2Q3B7J2 385 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ABHD17CQ6PCB6 329 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 VASH1Q7L8A9 365 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 RNF113BQ8IZP6 322 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 RIT1Q92963 219 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ELP4Q96EB1 424 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ZFYVE21Q9BQ24 234 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 FBXL3Q9UKT7 428 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 MYO10Q9HD67 2058 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ACOT7O00154 380 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF432O94892 652 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 LDOC1O95751 146 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 CPMP14384 443 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 BSGP35613 385 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 BCL6P41182 706 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 FRKP42685 505 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 SRP9P49458 86 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 GZMKP49863 264 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 BTG1P62324 171 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 FOXK2Q01167 660 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 MAPK14Q16539 360 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 CCDC58Q4VC31 144 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 C12orf73Q69YU5 71 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC48A1Q6P1K1 146 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 C1orf94Q6P1W5 598 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 CCDC71Q8IV32 467 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF101Q8IZC7 436 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC16A11Q8NCK7 471 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 GALNT11Q8NCW6 608 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 FAM83CQ9BQN1 747 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 ISYNA1Q9NPH2 558 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 TAS2R8Q9NYW2 309 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 PRODH2Q9UF12 536 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 TMPRSS11EQ9UL52 423 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 LRIT2A6NDA9 550 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 HIDE1A8MVS5 230 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 GPR89AB7ZAQ6 455 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 CDC40O60508 579 aaKnown RBP eCLIP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF780AO75290 641 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 IGHA2P01877 340 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 CHRM4P08173 479 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 GPR89BP0CG08 455 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 GP1BBP13224 206 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 TEAD1P28347 426 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 GDNFP39905 211 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 OR3A2P47893 321 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 CCR6P51684 374 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 HMGA2P52926 109 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 GPR50Q13585 617 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 CRMP1Q14194 572 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 C3P1Q6ZMU1 363 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 FCRLAQ7L513 359 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 BEST3Q8N1M1 668 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 MRPL43Q8N983 215 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 PLA2G15Q8NCC3 412 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 HAVCR1Q96D42 359 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 MMABQ96EY8 250 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 APOOQ9BUR5 198 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 SAGE1Q9NXZ1 904 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 V9GY05 133 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 TTC3P53804 2025 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 ZFC3H1O60293 1989 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 GOSR2O14653 212 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 HCRTR2O43614 444 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 PEX14O75381 377 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC2A10O95528 541 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 C1QCP02747 245 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 RNH1P13489 461 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF20P17024 532 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 OPRD1P41143 372 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 ERVK-25P63136 954 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 APOOLQ6UXV4 268 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 MFSD9Q8NBP5 474 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 OR2T4Q8NH00 348 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 TNFRSF13CQ96RJ3 184 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms